Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-35]:
1ay7b_PU0_1-35
CI=0.47


[36-51]:
1ay7b_PU0_36-51
CI=0.67


[52-96 ]:
1ay7b_PU0_52-96
CI=3.96


Level 1
PU
Molecule needs Java 1.4 Structure


[1-17]:
1ay7b_PU1_1-17
CI=0.21


[18-35]:
1ay7b_PU1_18-35
CI=0.69


[36-51]:
1ay7b_PU1_36-51
CI=0.67


[52-96 ]:
1ay7b_PU1_52-96
CI=3.96


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-17]:
1ay7b_PU_1-17
CI=0.21


[18-35]:
1ay7b_PU_18-35
CI=0.69


[36-51]:
1ay7b_PU_36-51
CI=0.67


[52-71]:
1ay7b_PU_52-71
CI=2.79


[72-96 ]:
1ay7b_PU_72-96
CI=1.89