Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-54]:
1ayoa_PU0_1-54
CI=1.92


[55-82]:
1ayoa_PU0_55-82
CI=2.43


[83-130 ]:
1ayoa_PU0_83-130
CI=1.52


Level 1
PU
Molecule needs Java 1.4 Structure


[1-54]:
1ayoa_PU1_1-54
CI=1.92


[55-82]:
1ayoa_PU1_55-82
CI=2.43


[83-100]:
1ayoa_PU1_83-100
CI=0.00


[101-130 ]:
1ayoa_PU1_101-130
CI=2.22


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-33]:
1ayoa_PU_1-33
CI=2.55


[34-54]:
1ayoa_PU_34-54
CI=0.09


[55-82]:
1ayoa_PU_55-82
CI=2.43


[83-100]:
1ayoa_PU_83-100
CI=0.00


[101-130 ]:
1ayoa_PU_101-130
CI=2.22