Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-68]:
1b0na_PU0_1-68
CI=1.82


[69-103 ]:
1b0na_PU0_69-103
CI=0.21


Level 1
PU
Molecule needs Java 1.4 Structure


[1-68]:
1b0na_PU1_1-68
CI=1.82


[69-85]:
1b0na_PU1_69-85
CI=0.00


[86-103 ]:
1b0na_PU1_86-103
CI=0.00


Level 2
PU
Molecule needs Java 1.4 Structure


[1-42]:
1b0na_PU2_1-42
CI=1.62


[43-68]:
1b0na_PU2_43-68
CI=0.50


[69-85]:
1b0na_PU2_69-85
CI=0.00


[86-103 ]:
1b0na_PU2_86-103
CI=0.00


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-25]:
1b0na_PU_1-25
CI=0.37


[26-42]:
1b0na_PU_26-42
CI=0.74


[43-68]:
1b0na_PU_43-68
CI=0.50


[69-85]:
1b0na_PU_69-85
CI=0.00


[86-103 ]:
1b0na_PU_86-103
CI=0.00