Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-79]:
1b4pa_PU0_1-79
CI=2.91


[80-187]:
1b4pa_PU0_80-187
CI=1.69


[188-217 ]:
1b4pa_PU0_188-217
CI=1.19


Level 1
PU
Molecule needs Java 1.4 Structure


[1-79]:
1b4pa_PU1_1-79
CI=2.91


[80-108]:
1b4pa_PU1_80-108
CI=0.45


[109-129]:
1b4pa_PU1_109-129
CI=0.44


[130-187]:
1b4pa_PU1_130-187
CI=1.17


[188-217 ]:
1b4pa_PU1_188-217
CI=1.19


Level 2
PU
Molecule needs Java 1.4 Structure


[1-32]:
1b4pa_PU2_1-32
CI=2.08


[33-52]:
1b4pa_PU2_33-52
CI=0.93


[53-79]:
1b4pa_PU2_53-79
CI=2.01


[80-108]:
1b4pa_PU2_80-108
CI=0.45


[109-129]:
1b4pa_PU2_109-129
CI=0.44


[130-187]:
1b4pa_PU2_130-187
CI=1.17


[188-217 ]:
1b4pa_PU2_188-217
CI=1.19


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-32]:
1b4pa_PU_1-32
CI=2.08


[33-52]:
1b4pa_PU_33-52
CI=0.93


[53-79]:
1b4pa_PU_53-79
CI=2.01


[80-108]:
1b4pa_PU_80-108
CI=0.45


[109-129]:
1b4pa_PU_109-129
CI=0.44


[130-156]:
1b4pa_PU_130-156
CI=0.69


[157-187]:
1b4pa_PU_157-187
CI=0.72


[188-217 ]:
1b4pa_PU_188-217
CI=1.19