Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-42]:
1b5pa_PU0_1-42
CI=0.05


[43-294]:
1b5pa_PU0_43-294
CI=4.14


[295-382 ]:
1b5pa_PU0_295-382
CI=2.61


Level 1
PU
Molecule needs Java 1.4 Structure


[1-42]:
1b5pa_PU1_1-42
CI=0.05


[43-111]:
1b5pa_PU1_43-111
CI=1.13


[112-230]:
1b5pa_PU1_112-230
CI=3.83


[231-294]:
1b5pa_PU1_231-294
CI=0.93


[295-382 ]:
1b5pa_PU1_295-382
CI=2.61


Level 2
PU
Molecule needs Java 1.4 Structure


[1-42]:
1b5pa_PU2_1-42
CI=0.05


[43-63]:
1b5pa_PU2_43-63
CI=0.08


[64-111]:
1b5pa_PU2_64-111
CI=1.57


[112-230]:
1b5pa_PU2_112-230
CI=3.83


[231-294]:
1b5pa_PU2_231-294
CI=0.93


[295-382 ]:
1b5pa_PU2_295-382
CI=2.61


Level 3
PU
Molecule needs Java 1.4 Structure


[1-42]:
1b5pa_PU3_1-42
CI=0.05


[43-63]:
1b5pa_PU3_43-63
CI=0.08


[64-111]:
1b5pa_PU3_64-111
CI=1.57


[112-230]:
1b5pa_PU3_112-230
CI=3.83


[231-247]:
1b5pa_PU3_231-247
CI=1.63


[248-266]:
1b5pa_PU3_248-266
CI=0.10


[267-294]:
1b5pa_PU3_267-294
CI=0.13


[295-382 ]:
1b5pa_PU3_295-382
CI=2.61


Level 4
PU
Molecule needs Java 1.4 Structure


[1-18]:
1b5pa_PU4_1-18
CI=0.00


[19-42]:
1b5pa_PU4_19-42
CI=0.08


[43-63]:
1b5pa_PU4_43-63
CI=0.08


[64-111]:
1b5pa_PU4_64-111
CI=1.57


[112-230]:
1b5pa_PU4_112-230
CI=3.83


[231-247]:
1b5pa_PU4_231-247
CI=1.63


[248-266]:
1b5pa_PU4_248-266
CI=0.10


[267-294]:
1b5pa_PU4_267-294
CI=0.13


[295-382 ]:
1b5pa_PU4_295-382
CI=2.61


Level 5
PU
Molecule needs Java 1.4 Structure


[1-18]:
1b5pa_PU5_1-18
CI=0.00


[19-42]:
1b5pa_PU5_19-42
CI=0.08


[43-63]:
1b5pa_PU5_43-63
CI=0.08


[64-111]:
1b5pa_PU5_64-111
CI=1.57


[112-230]:
1b5pa_PU5_112-230
CI=3.83


[231-247]:
1b5pa_PU5_231-247
CI=1.63


[248-266]:
1b5pa_PU5_248-266
CI=0.10


[267-294]:
1b5pa_PU5_267-294
CI=0.13


[295-326]:
1b5pa_PU5_295-326
CI=0.99


[327-362]:
1b5pa_PU5_327-362
CI=2.49


[363-382 ]:
1b5pa_PU5_363-382
CI=0.00


Level 6
PU
Molecule needs Java 1.4 Structure


[1-18]:
1b5pa_PU6_1-18
CI=0.00


[19-42]:
1b5pa_PU6_19-42
CI=0.08


[43-63]:
1b5pa_PU6_43-63
CI=0.08


[64-111]:
1b5pa_PU6_64-111
CI=1.57


[112-170]:
1b5pa_PU6_112-170
CI=2.93


[171-230]:
1b5pa_PU6_171-230
CI=2.93


[231-247]:
1b5pa_PU6_231-247
CI=1.63


[248-266]:
1b5pa_PU6_248-266
CI=0.10


[267-294]:
1b5pa_PU6_267-294
CI=0.13


[295-326]:
1b5pa_PU6_295-326
CI=0.99


[327-362]:
1b5pa_PU6_327-362
CI=2.49


[363-382 ]:
1b5pa_PU6_363-382
CI=0.00


Final level 7

PU
Molecule needs Java 1.4 Structure


[1-18]:
1b5pa_PU_1-18
CI=0.00


[19-42]:
1b5pa_PU_19-42
CI=0.08


[43-63]:
1b5pa_PU_43-63
CI=0.08


[64-89]:
1b5pa_PU_64-89
CI=0.64


[90-111]:
1b5pa_PU_90-111
CI=0.25


[112-170]:
1b5pa_PU_112-170
CI=2.93


[171-230]:
1b5pa_PU_171-230
CI=2.93


[231-247]:
1b5pa_PU_231-247
CI=1.63


[248-266]:
1b5pa_PU_248-266
CI=0.10


[267-294]:
1b5pa_PU_267-294
CI=0.13


[295-326]:
1b5pa_PU_295-326
CI=0.99


[327-362]:
1b5pa_PU_327-362
CI=2.49


[363-382 ]:
1b5pa_PU_363-382
CI=0.00