Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-256]:
1b6a0_PU0_1-256
CI=4.04


[257-321]:
1b6a0_PU0_257-321
CI=2.13


[322-355 ]:
1b6a0_PU0_322-355
CI=1.28


Level 1
PU
Molecule needs Java 1.4 Structure


[1-147]:
1b6a0_PU1_1-147
CI=3.48


[148-256]:
1b6a0_PU1_148-256
CI=4.12


[257-321]:
1b6a0_PU1_257-321
CI=2.13


[322-355 ]:
1b6a0_PU1_322-355
CI=1.28


Level 2
PU
Molecule needs Java 1.4 Structure


[1-22]:
1b6a0_PU2_1-22
CI=0.67


[23-39]:
1b6a0_PU2_23-39
CI=0.00


[40-147]:
1b6a0_PU2_40-147
CI=3.88


[148-256]:
1b6a0_PU2_148-256
CI=4.12


[257-321]:
1b6a0_PU2_257-321
CI=2.13


[322-355 ]:
1b6a0_PU2_322-355
CI=1.28


Level 3
PU
Molecule needs Java 1.4 Structure


[1-22]:
1b6a0_PU3_1-22
CI=0.67


[23-39]:
1b6a0_PU3_23-39
CI=0.00


[40-147]:
1b6a0_PU3_40-147
CI=3.88


[148-256]:
1b6a0_PU3_148-256
CI=4.12


[257-321]:
1b6a0_PU3_257-321
CI=2.13


[322-338]:
1b6a0_PU3_322-338
CI=0.21


[339-355 ]:
1b6a0_PU3_339-355
CI=1.20


Level 4
PU
Molecule needs Java 1.4 Structure


[1-22]:
1b6a0_PU4_1-22
CI=0.67


[23-39]:
1b6a0_PU4_23-39
CI=0.00


[40-147]:
1b6a0_PU4_40-147
CI=3.88


[148-205]:
1b6a0_PU4_148-205
CI=1.95


[206-222]:
1b6a0_PU4_206-222
CI=2.73


[223-256]:
1b6a0_PU4_223-256
CI=0.06


[257-321]:
1b6a0_PU4_257-321
CI=2.13


[322-338]:
1b6a0_PU4_322-338
CI=0.21


[339-355 ]:
1b6a0_PU4_339-355
CI=1.20


Level 5
PU
Molecule needs Java 1.4 Structure


[1-22]:
1b6a0_PU5_1-22
CI=0.67


[23-39]:
1b6a0_PU5_23-39
CI=0.00


[40-147]:
1b6a0_PU5_40-147
CI=3.88


[148-163]:
1b6a0_PU5_148-163
CI=0.00


[164-180]:
1b6a0_PU5_164-180
CI=0.76


[181-205]:
1b6a0_PU5_181-205
CI=1.51


[206-222]:
1b6a0_PU5_206-222
CI=2.73


[223-256]:
1b6a0_PU5_223-256
CI=0.06


[257-321]:
1b6a0_PU5_257-321
CI=2.13


[322-338]:
1b6a0_PU5_322-338
CI=0.21


[339-355 ]:
1b6a0_PU5_339-355
CI=1.20


Level 6
PU
Molecule needs Java 1.4 Structure


[1-22]:
1b6a0_PU6_1-22
CI=0.67


[23-39]:
1b6a0_PU6_23-39
CI=0.00


[40-63]:
1b6a0_PU6_40-63
CI=0.00


[64-147]:
1b6a0_PU6_64-147
CI=3.98


[148-163]:
1b6a0_PU6_148-163
CI=0.00


[164-180]:
1b6a0_PU6_164-180
CI=0.76


[181-205]:
1b6a0_PU6_181-205
CI=1.51


[206-222]:
1b6a0_PU6_206-222
CI=2.73


[223-256]:
1b6a0_PU6_223-256
CI=0.06


[257-321]:
1b6a0_PU6_257-321
CI=2.13


[322-338]:
1b6a0_PU6_322-338
CI=0.21


[339-355 ]:
1b6a0_PU6_339-355
CI=1.20


Level 7
PU
Molecule needs Java 1.4 Structure


[1-22]:
1b6a0_PU7_1-22
CI=0.67


[23-39]:
1b6a0_PU7_23-39
CI=0.00


[40-63]:
1b6a0_PU7_40-63
CI=0.00


[64-79]:
1b6a0_PU7_64-79
CI=0.12


[80-95]:
1b6a0_PU7_80-95
CI=1.14


[96-147]:
1b6a0_PU7_96-147
CI=3.62


[148-163]:
1b6a0_PU7_148-163
CI=0.00


[164-180]:
1b6a0_PU7_164-180
CI=0.76


[181-205]:
1b6a0_PU7_181-205
CI=1.51


[206-222]:
1b6a0_PU7_206-222
CI=2.73


[223-256]:
1b6a0_PU7_223-256
CI=0.06


[257-321]:
1b6a0_PU7_257-321
CI=2.13


[322-338]:
1b6a0_PU7_322-338
CI=0.21


[339-355 ]:
1b6a0_PU7_339-355
CI=1.20


Level 8
PU
Molecule needs Java 1.4 Structure


[1-22]:
1b6a0_PU8_1-22
CI=0.67


[23-39]:
1b6a0_PU8_23-39
CI=0.00


[40-63]:
1b6a0_PU8_40-63
CI=0.00


[64-79]:
1b6a0_PU8_64-79
CI=0.12


[80-95]:
1b6a0_PU8_80-95
CI=1.14


[96-147]:
1b6a0_PU8_96-147
CI=3.62


[148-163]:
1b6a0_PU8_148-163
CI=0.00


[164-180]:
1b6a0_PU8_164-180
CI=0.76


[181-205]:
1b6a0_PU8_181-205
CI=1.51


[206-222]:
1b6a0_PU8_206-222
CI=2.73


[223-256]:
1b6a0_PU8_223-256
CI=0.06


[257-280]:
1b6a0_PU8_257-280
CI=0.15


[281-303]:
1b6a0_PU8_281-303
CI=0.15


[304-321]:
1b6a0_PU8_304-321
CI=0.41


[322-338]:
1b6a0_PU8_322-338
CI=0.21


[339-355 ]:
1b6a0_PU8_339-355
CI=1.20


Final level 9

PU
Molecule needs Java 1.4 Structure


[1-22]:
1b6a0_PU_1-22
CI=0.67


[23-39]:
1b6a0_PU_23-39
CI=0.00


[40-63]:
1b6a0_PU_40-63
CI=0.00


[64-79]:
1b6a0_PU_64-79
CI=0.12


[80-95]:
1b6a0_PU_80-95
CI=1.14


[96-118]:
1b6a0_PU_96-118
CI=1.62


[119-147]:
1b6a0_PU_119-147
CI=2.81


[148-163]:
1b6a0_PU_148-163
CI=0.00


[164-180]:
1b6a0_PU_164-180
CI=0.76


[181-205]:
1b6a0_PU_181-205
CI=1.51


[206-222]:
1b6a0_PU_206-222
CI=2.73


[223-256]:
1b6a0_PU_223-256
CI=0.06


[257-280]:
1b6a0_PU_257-280
CI=0.15


[281-303]:
1b6a0_PU_281-303
CI=0.15


[304-321]:
1b6a0_PU_304-321
CI=0.41


[322-338]:
1b6a0_PU_322-338
CI=0.21


[339-355 ]:
1b6a0_PU_339-355
CI=1.20