Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-143]:
1b6g0_PU0_1-143
CI=4.03


[144-308 ]:
1b6g0_PU0_144-308
CI=2.97


Level 1
PU
Molecule needs Java 1.4 Structure


[1-143]:
1b6g0_PU1_1-143
CI=4.03


[144-163]:
1b6g0_PU1_144-163
CI=0.73


[164-227]:
1b6g0_PU1_164-227
CI=1.55


[228-308 ]:
1b6g0_PU1_228-308
CI=2.47


Level 2
PU
Molecule needs Java 1.4 Structure


[1-143]:
1b6g0_PU2_1-143
CI=4.03


[144-163]:
1b6g0_PU2_144-163
CI=0.73


[164-227]:
1b6g0_PU2_164-227
CI=1.55


[228-246]:
1b6g0_PU2_228-246
CI=0.00


[247-308 ]:
1b6g0_PU2_247-308
CI=2.85


Level 3
PU
Molecule needs Java 1.4 Structure


[1-143]:
1b6g0_PU3_1-143
CI=4.03


[144-163]:
1b6g0_PU3_144-163
CI=0.73


[164-184]:
1b6g0_PU3_164-184
CI=0.80


[185-208]:
1b6g0_PU3_185-208
CI=1.85


[209-227]:
1b6g0_PU3_209-227
CI=0.10


[228-246]:
1b6g0_PU3_228-246
CI=0.00


[247-308 ]:
1b6g0_PU3_247-308
CI=2.85


Level 4
PU
Molecule needs Java 1.4 Structure


[1-97]:
1b6g0_PU4_1-97
CI=3.75


[98-143]:
1b6g0_PU4_98-143
CI=1.78


[144-163]:
1b6g0_PU4_144-163
CI=0.73


[164-184]:
1b6g0_PU4_164-184
CI=0.80


[185-208]:
1b6g0_PU4_185-208
CI=1.85


[209-227]:
1b6g0_PU4_209-227
CI=0.10


[228-246]:
1b6g0_PU4_228-246
CI=0.00


[247-308 ]:
1b6g0_PU4_247-308
CI=2.85


Level 5
PU
Molecule needs Java 1.4 Structure


[1-16]:
1b6g0_PU5_1-16
CI=0.00


[17-88]:
1b6g0_PU5_17-88
CI=3.91


[89-97]:
1b6g0_PU5_89-97
CI=0.19


[98-143]:
1b6g0_PU5_98-143
CI=1.78


[144-163]:
1b6g0_PU5_144-163
CI=0.73


[164-184]:
1b6g0_PU5_164-184
CI=0.80


[185-208]:
1b6g0_PU5_185-208
CI=1.85


[209-227]:
1b6g0_PU5_209-227
CI=0.10


[228-246]:
1b6g0_PU5_228-246
CI=0.00


[247-308 ]:
1b6g0_PU5_247-308
CI=2.85


Level 6
PU
Molecule needs Java 1.4 Structure


[1-16]:
1b6g0_PU6_1-16
CI=0.00


[17-88]:
1b6g0_PU6_17-88
CI=3.91


[89-97]:
1b6g0_PU6_89-97
CI=0.19


[98-115]:
1b6g0_PU6_98-115
CI=0.10


[116-143]:
1b6g0_PU6_116-143
CI=1.95


[144-163]:
1b6g0_PU6_144-163
CI=0.73


[164-184]:
1b6g0_PU6_164-184
CI=0.80


[185-208]:
1b6g0_PU6_185-208
CI=1.85


[209-227]:
1b6g0_PU6_209-227
CI=0.10


[228-246]:
1b6g0_PU6_228-246
CI=0.00


[247-308 ]:
1b6g0_PU6_247-308
CI=2.85


Level 7
PU
Molecule needs Java 1.4 Structure


[1-16]:
1b6g0_PU7_1-16
CI=0.00


[17-88]:
1b6g0_PU7_17-88
CI=3.91


[89-97]:
1b6g0_PU7_89-97
CI=0.19


[98-115]:
1b6g0_PU7_98-115
CI=0.10


[116-143]:
1b6g0_PU7_116-143
CI=1.95


[144-163]:
1b6g0_PU7_144-163
CI=0.73


[164-184]:
1b6g0_PU7_164-184
CI=0.80


[185-208]:
1b6g0_PU7_185-208
CI=1.85


[209-227]:
1b6g0_PU7_209-227
CI=0.10


[228-246]:
1b6g0_PU7_228-246
CI=0.00


[247-289]:
1b6g0_PU7_247-289
CI=3.38


[290-308 ]:
1b6g0_PU7_290-308
CI=0.00


Level 8
PU
Molecule needs Java 1.4 Structure


[1-16]:
1b6g0_PU8_1-16
CI=0.00


[17-42]:
1b6g0_PU8_17-42
CI=2.04


[43-79]:
1b6g0_PU8_43-79
CI=2.17


[80-88]:
1b6g0_PU8_80-88
CI=0.59


[89-97]:
1b6g0_PU8_89-97
CI=0.19


[98-115]:
1b6g0_PU8_98-115
CI=0.10


[116-143]:
1b6g0_PU8_116-143
CI=1.95


[144-163]:
1b6g0_PU8_144-163
CI=0.73


[164-184]:
1b6g0_PU8_164-184
CI=0.80


[185-208]:
1b6g0_PU8_185-208
CI=1.85


[209-227]:
1b6g0_PU8_209-227
CI=0.10


[228-246]:
1b6g0_PU8_228-246
CI=0.00


[247-289]:
1b6g0_PU8_247-289
CI=3.38


[290-308 ]:
1b6g0_PU8_290-308
CI=0.00


Level 9
PU
Molecule needs Java 1.4 Structure


[1-16]:
1b6g0_PU9_1-16
CI=0.00


[17-42]:
1b6g0_PU9_17-42
CI=2.04


[43-63]:
1b6g0_PU9_43-63
CI=0.52


[64-79]:
1b6g0_PU9_64-79
CI=0.46


[80-88]:
1b6g0_PU9_80-88
CI=0.59


[89-97]:
1b6g0_PU9_89-97
CI=0.19


[98-115]:
1b6g0_PU9_98-115
CI=0.10


[116-143]:
1b6g0_PU9_116-143
CI=1.95


[144-163]:
1b6g0_PU9_144-163
CI=0.73


[164-184]:
1b6g0_PU9_164-184
CI=0.80


[185-208]:
1b6g0_PU9_185-208
CI=1.85


[209-227]:
1b6g0_PU9_209-227
CI=0.10


[228-246]:
1b6g0_PU9_228-246
CI=0.00


[247-289]:
1b6g0_PU9_247-289
CI=3.38


[290-308 ]:
1b6g0_PU9_290-308
CI=0.00


Final level 10

PU
Molecule needs Java 1.4 Structure


[1-16]:
1b6g0_PU_1-16
CI=0.00


[17-42]:
1b6g0_PU_17-42
CI=2.04


[43-63]:
1b6g0_PU_43-63
CI=0.52


[64-79]:
1b6g0_PU_64-79
CI=0.46


[80-88]:
1b6g0_PU_80-88
CI=0.59


[89-97]:
1b6g0_PU_89-97
CI=0.19


[98-115]:
1b6g0_PU_98-115
CI=0.10


[116-143]:
1b6g0_PU_116-143
CI=1.95


[144-163]:
1b6g0_PU_144-163
CI=0.73


[164-184]:
1b6g0_PU_164-184
CI=0.80


[185-208]:
1b6g0_PU_185-208
CI=1.85


[209-227]:
1b6g0_PU_209-227
CI=0.10


[228-246]:
1b6g0_PU_228-246
CI=0.00


[247-273]:
1b6g0_PU_247-273
CI=0.68


[274-289]:
1b6g0_PU_274-289
CI=0.00


[290-308 ]:
1b6g0_PU_290-308
CI=0.00