Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-22]:
1b93a_PU0_1-22
CI=0.00


[23-64]:
1b93a_PU0_23-64
CI=1.81


[65-148 ]:
1b93a_PU0_65-148
CI=1.94


Level 1
PU
Molecule needs Java 1.4 Structure


[1-22]:
1b93a_PU1_1-22
CI=0.00


[23-64]:
1b93a_PU1_23-64
CI=1.81


[65-118]:
1b93a_PU1_65-118
CI=2.40


[119-148 ]:
1b93a_PU1_119-148
CI=0.06


Level 2
PU
Molecule needs Java 1.4 Structure


[1-22]:
1b93a_PU2_1-22
CI=0.00


[23-39]:
1b93a_PU2_23-39
CI=0.11


[40-64]:
1b93a_PU2_40-64
CI=2.34


[65-118]:
1b93a_PU2_65-118
CI=2.40


[119-148 ]:
1b93a_PU2_119-148
CI=0.06


Level 3
PU
Molecule needs Java 1.4 Structure


[1-22]:
1b93a_PU3_1-22
CI=0.00


[23-39]:
1b93a_PU3_23-39
CI=0.11


[40-64]:
1b93a_PU3_40-64
CI=2.34


[65-83]:
1b93a_PU3_65-83
CI=0.57


[84-118]:
1b93a_PU3_84-118
CI=1.52


[119-148 ]:
1b93a_PU3_119-148
CI=0.06


Final level 4

PU
Molecule needs Java 1.4 Structure


[1-22]:
1b93a_PU_1-22
CI=0.00


[23-39]:
1b93a_PU_23-39
CI=0.11


[40-64]:
1b93a_PU_40-64
CI=2.34


[65-83]:
1b93a_PU_65-83
CI=0.57


[84-102]:
1b93a_PU_84-102
CI=0.19


[103-118]:
1b93a_PU_103-118
CI=0.46


[119-148 ]:
1b93a_PU_119-148
CI=0.06