Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-204]:
1b9ha_PU0_1-204
CI=4.48


[205-230]:
1b9ha_PU0_205-230
CI=2.52


[231-384 ]:
1b9ha_PU0_231-384
CI=2.20


Level 1
PU
Molecule needs Java 1.4 Structure


[1-204]:
1b9ha_PU1_1-204
CI=4.48


[205-230]:
1b9ha_PU1_205-230
CI=2.52


[231-248]:
1b9ha_PU1_231-248
CI=0.00


[249-384 ]:
1b9ha_PU1_249-384
CI=2.49


Level 2
PU
Molecule needs Java 1.4 Structure


[1-37]:
1b9ha_PU2_1-37
CI=0.46


[38-204]:
1b9ha_PU2_38-204
CI=5.30


[205-230]:
1b9ha_PU2_205-230
CI=2.52


[231-248]:
1b9ha_PU2_231-248
CI=0.00


[249-384 ]:
1b9ha_PU2_249-384
CI=2.49


Level 3
PU
Molecule needs Java 1.4 Structure


[1-37]:
1b9ha_PU3_1-37
CI=0.46


[38-204]:
1b9ha_PU3_38-204
CI=5.30


[205-230]:
1b9ha_PU3_205-230
CI=2.52


[231-248]:
1b9ha_PU3_231-248
CI=0.00


[249-320]:
1b9ha_PU3_249-320
CI=1.20


[321-344]:
1b9ha_PU3_321-344
CI=0.53


[345-384 ]:
1b9ha_PU3_345-384
CI=0.23


Level 4
PU
Molecule needs Java 1.4 Structure


[1-37]:
1b9ha_PU4_1-37
CI=0.46


[38-204]:
1b9ha_PU4_38-204
CI=5.30


[205-230]:
1b9ha_PU4_205-230
CI=2.52


[231-248]:
1b9ha_PU4_231-248
CI=0.00


[249-294]:
1b9ha_PU4_249-294
CI=1.54


[295-320]:
1b9ha_PU4_295-320
CI=0.57


[321-344]:
1b9ha_PU4_321-344
CI=0.53


[345-384 ]:
1b9ha_PU4_345-384
CI=0.23


Level 5
PU
Molecule needs Java 1.4 Structure


[1-37]:
1b9ha_PU5_1-37
CI=0.46


[38-204]:
1b9ha_PU5_38-204
CI=5.30


[205-230]:
1b9ha_PU5_205-230
CI=2.52


[231-248]:
1b9ha_PU5_231-248
CI=0.00


[249-294]:
1b9ha_PU5_249-294
CI=1.54


[295-320]:
1b9ha_PU5_295-320
CI=0.57


[321-344]:
1b9ha_PU5_321-344
CI=0.53


[345-361]:
1b9ha_PU5_345-361
CI=0.10


[362-384 ]:
1b9ha_PU5_362-384
CI=0.31


Level 6
PU
Molecule needs Java 1.4 Structure


[1-17]:
1b9ha_PU6_1-17
CI=0.00


[18-37]:
1b9ha_PU6_18-37
CI=0.83


[38-204]:
1b9ha_PU6_38-204
CI=5.30


[205-230]:
1b9ha_PU6_205-230
CI=2.52


[231-248]:
1b9ha_PU6_231-248
CI=0.00


[249-294]:
1b9ha_PU6_249-294
CI=1.54


[295-320]:
1b9ha_PU6_295-320
CI=0.57


[321-344]:
1b9ha_PU6_321-344
CI=0.53


[345-361]:
1b9ha_PU6_345-361
CI=0.10


[362-384 ]:
1b9ha_PU6_362-384
CI=0.31


Level 7
PU
Molecule needs Java 1.4 Structure


[1-17]:
1b9ha_PU7_1-17
CI=0.00


[18-37]:
1b9ha_PU7_18-37
CI=0.83


[38-61]:
1b9ha_PU7_38-61
CI=1.40


[62-155]:
1b9ha_PU7_62-155
CI=4.35


[156-204]:
1b9ha_PU7_156-204
CI=3.34


[205-230]:
1b9ha_PU7_205-230
CI=2.52


[231-248]:
1b9ha_PU7_231-248
CI=0.00


[249-294]:
1b9ha_PU7_249-294
CI=1.54


[295-320]:
1b9ha_PU7_295-320
CI=0.57


[321-344]:
1b9ha_PU7_321-344
CI=0.53


[345-361]:
1b9ha_PU7_345-361
CI=0.10


[362-384 ]:
1b9ha_PU7_362-384
CI=0.31


Level 8
PU
Molecule needs Java 1.4 Structure


[1-17]:
1b9ha_PU8_1-17
CI=0.00


[18-37]:
1b9ha_PU8_18-37
CI=0.83


[38-61]:
1b9ha_PU8_38-61
CI=1.40


[62-100]:
1b9ha_PU8_62-100
CI=3.02


[101-155]:
1b9ha_PU8_101-155
CI=2.88


[156-204]:
1b9ha_PU8_156-204
CI=3.34


[205-230]:
1b9ha_PU8_205-230
CI=2.52


[231-248]:
1b9ha_PU8_231-248
CI=0.00


[249-294]:
1b9ha_PU8_249-294
CI=1.54


[295-320]:
1b9ha_PU8_295-320
CI=0.57


[321-344]:
1b9ha_PU8_321-344
CI=0.53


[345-361]:
1b9ha_PU8_345-361
CI=0.10


[362-384 ]:
1b9ha_PU8_362-384
CI=0.31


Final level 9

PU
Molecule needs Java 1.4 Structure


[1-17]:
1b9ha_PU_1-17
CI=0.00


[18-37]:
1b9ha_PU_18-37
CI=0.83


[38-61]:
1b9ha_PU_38-61
CI=1.40


[62-100]:
1b9ha_PU_62-100
CI=3.02


[101-155]:
1b9ha_PU_101-155
CI=2.88


[156-204]:
1b9ha_PU_156-204
CI=3.34


[205-230]:
1b9ha_PU_205-230
CI=2.52


[231-248]:
1b9ha_PU_231-248
CI=0.00


[249-265]:
1b9ha_PU_249-265
CI=0.00


[266-294]:
1b9ha_PU_266-294
CI=1.57


[295-320]:
1b9ha_PU_295-320
CI=0.57


[321-344]:
1b9ha_PU_321-344
CI=0.53


[345-361]:
1b9ha_PU_345-361
CI=0.10


[362-384 ]:
1b9ha_PU_362-384
CI=0.31