Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-72]:
1bbha_PU0_1-72
CI=1.72


[73-131 ]:
1bbha_PU0_73-131
CI=1.30


Level 1
PU
Molecule needs Java 1.4 Structure


[1-16]:
1bbha_PU1_1-16
CI=0.00


[17-52]:
1bbha_PU1_17-52
CI=1.31


[53-72]:
1bbha_PU1_53-72
CI=0.55


[73-131 ]:
1bbha_PU1_73-131
CI=1.30


Level 2
PU
Molecule needs Java 1.4 Structure


[1-16]:
1bbha_PU2_1-16
CI=0.00


[17-52]:
1bbha_PU2_17-52
CI=1.31


[53-72]:
1bbha_PU2_53-72
CI=0.55


[73-90]:
1bbha_PU2_73-90
CI=0.30


[91-119]:
1bbha_PU2_91-119
CI=1.11


[120-131 ]:
1bbha_PU2_120-131
CI=0.00


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-16]:
1bbha_PU_1-16
CI=0.00


[17-35]:
1bbha_PU_17-35
CI=0.19


[36-52]:
1bbha_PU_36-52
CI=0.00


[53-72]:
1bbha_PU_53-72
CI=0.55


[73-90]:
1bbha_PU_73-90
CI=0.30


[91-119]:
1bbha_PU_91-119
CI=1.11


[120-131 ]:
1bbha_PU_120-131
CI=0.00