Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-249]:
1bdb0_PU0_1-249
CI=4.62


[250-267 ]:
1bdb0_PU0_250-267
CI=0.21


Level 1
PU
Molecule needs Java 1.4 Structure


[1-80]:
1bdb0_PU1_1-80
CI=3.59


[81-249]:
1bdb0_PU1_81-249
CI=3.94


[250-267 ]:
1bdb0_PU1_250-267
CI=0.21


Level 2
PU
Molecule needs Java 1.4 Structure


[1-80]:
1bdb0_PU2_1-80
CI=3.59


[81-198]:
1bdb0_PU2_81-198
CI=3.27


[199-214]:
1bdb0_PU2_199-214
CI=1.37


[215-249]:
1bdb0_PU2_215-249
CI=0.48


[250-267 ]:
1bdb0_PU2_250-267
CI=0.21


Level 3
PU
Molecule needs Java 1.4 Structure


[1-57]:
1bdb0_PU3_1-57
CI=3.61


[58-80]:
1bdb0_PU3_58-80
CI=0.80


[81-198]:
1bdb0_PU3_81-198
CI=3.27


[199-214]:
1bdb0_PU3_199-214
CI=1.37


[215-249]:
1bdb0_PU3_215-249
CI=0.48


[250-267 ]:
1bdb0_PU3_250-267
CI=0.21


Level 4
PU
Molecule needs Java 1.4 Structure


[1-57]:
1bdb0_PU4_1-57
CI=3.61


[58-80]:
1bdb0_PU4_58-80
CI=0.80


[81-198]:
1bdb0_PU4_81-198
CI=3.27


[199-214]:
1bdb0_PU4_199-214
CI=1.37


[215-233]:
1bdb0_PU4_215-233
CI=0.30


[234-249]:
1bdb0_PU4_234-249
CI=0.11


[250-267 ]:
1bdb0_PU4_250-267
CI=0.21


Level 5
PU
Molecule needs Java 1.4 Structure


[1-57]:
1bdb0_PU5_1-57
CI=3.61


[58-80]:
1bdb0_PU5_58-80
CI=0.80


[81-126]:
1bdb0_PU5_81-126
CI=0.90


[127-187]:
1bdb0_PU5_127-187
CI=2.94


[188-198]:
1bdb0_PU5_188-198
CI=0.00


[199-214]:
1bdb0_PU5_199-214
CI=1.37


[215-233]:
1bdb0_PU5_215-233
CI=0.30


[234-249]:
1bdb0_PU5_234-249
CI=0.11


[250-267 ]:
1bdb0_PU5_250-267
CI=0.21


Level 6
PU
Molecule needs Java 1.4 Structure


[1-35]:
1bdb0_PU6_1-35
CI=3.06


[36-57]:
1bdb0_PU6_36-57
CI=1.85


[58-80]:
1bdb0_PU6_58-80
CI=0.80


[81-126]:
1bdb0_PU6_81-126
CI=0.90


[127-187]:
1bdb0_PU6_127-187
CI=2.94


[188-198]:
1bdb0_PU6_188-198
CI=0.00


[199-214]:
1bdb0_PU6_199-214
CI=1.37


[215-233]:
1bdb0_PU6_215-233
CI=0.30


[234-249]:
1bdb0_PU6_234-249
CI=0.11


[250-267 ]:
1bdb0_PU6_250-267
CI=0.21


Level 7
PU
Molecule needs Java 1.4 Structure


[1-35]:
1bdb0_PU7_1-35
CI=3.06


[36-57]:
1bdb0_PU7_36-57
CI=1.85


[58-80]:
1bdb0_PU7_58-80
CI=0.80


[81-126]:
1bdb0_PU7_81-126
CI=0.90


[127-145]:
1bdb0_PU7_127-145
CI=0.10


[146-161]:
1bdb0_PU7_146-161
CI=0.46


[162-187]:
1bdb0_PU7_162-187
CI=0.94


[188-198]:
1bdb0_PU7_188-198
CI=0.00


[199-214]:
1bdb0_PU7_199-214
CI=1.37


[215-233]:
1bdb0_PU7_215-233
CI=0.30


[234-249]:
1bdb0_PU7_234-249
CI=0.11


[250-267 ]:
1bdb0_PU7_250-267
CI=0.21


Level 8
PU
Molecule needs Java 1.4 Structure


[1-35]:
1bdb0_PU8_1-35
CI=3.06


[36-57]:
1bdb0_PU8_36-57
CI=1.85


[58-80]:
1bdb0_PU8_58-80
CI=0.80


[81-108]:
1bdb0_PU8_81-108
CI=0.00


[109-126]:
1bdb0_PU8_109-126
CI=0.00


[127-145]:
1bdb0_PU8_127-145
CI=0.10


[146-161]:
1bdb0_PU8_146-161
CI=0.46


[162-187]:
1bdb0_PU8_162-187
CI=0.94


[188-198]:
1bdb0_PU8_188-198
CI=0.00


[199-214]:
1bdb0_PU8_199-214
CI=1.37


[215-233]:
1bdb0_PU8_215-233
CI=0.30


[234-249]:
1bdb0_PU8_234-249
CI=0.11


[250-267 ]:
1bdb0_PU8_250-267
CI=0.21


Final level 9

PU
Molecule needs Java 1.4 Structure


[1-19]:
1bdb0_PU_1-19
CI=0.49


[20-35]:
1bdb0_PU_20-35
CI=0.56


[36-57]:
1bdb0_PU_36-57
CI=1.85


[58-80]:
1bdb0_PU_58-80
CI=0.80


[81-108]:
1bdb0_PU_81-108
CI=0.00


[109-126]:
1bdb0_PU_109-126
CI=0.00


[127-145]:
1bdb0_PU_127-145
CI=0.10


[146-161]:
1bdb0_PU_146-161
CI=0.46


[162-187]:
1bdb0_PU_162-187
CI=0.94


[188-198]:
1bdb0_PU_188-198
CI=0.00


[199-214]:
1bdb0_PU_199-214
CI=1.37


[215-233]:
1bdb0_PU_215-233
CI=0.30


[234-249]:
1bdb0_PU_234-249
CI=0.11


[250-267 ]:
1bdb0_PU_250-267
CI=0.21