Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-16]:
1bdo0_PU0_1-16
CI=0.11


[17-61]:
1bdo0_PU0_17-61
CI=3.79


[62-80 ]:
1bdo0_PU0_62-80
CI=0.97


Final level 1

PU
Molecule needs Java 1.4 Structure


[1-16]:
1bdo0_PU_1-16
CI=0.11


[17-33]:
1bdo0_PU_17-33
CI=0.98


[34-61]:
1bdo0_PU_34-61
CI=2.58


[62-80 ]:
1bdo0_PU_62-80
CI=0.97