Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-17]:
1bea0_PU0_1-17
CI=0.75


[18-39]:
1bea0_PU0_18-39
CI=1.01


[40-116 ]:
1bea0_PU0_40-116
CI=3.38


Level 1
PU
Molecule needs Java 1.4 Structure


[1-17]:
1bea0_PU1_1-17
CI=0.75


[18-39]:
1bea0_PU1_18-39
CI=1.01


[40-56]:
1bea0_PU1_40-56
CI=0.64


[57-91]:
1bea0_PU1_57-91
CI=2.65


[92-116 ]:
1bea0_PU1_92-116
CI=2.18


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-17]:
1bea0_PU_1-17
CI=0.75


[18-39]:
1bea0_PU_18-39
CI=1.01


[40-56]:
1bea0_PU_40-56
CI=0.64


[57-75]:
1bea0_PU_57-75
CI=2.65


[76-91]:
1bea0_PU_76-91
CI=1.13


[92-116 ]:
1bea0_PU_92-116
CI=2.18