Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-22]:
1bgf0_PU0_1-22
CI=0.00


[23-108]:
1bgf0_PU0_23-108
CI=2.04


[109-124 ]:
1bgf0_PU0_109-124
CI=0.00


Level 1
PU
Molecule needs Java 1.4 Structure


[1-22]:
1bgf0_PU1_1-22
CI=0.00


[23-65]:
1bgf0_PU1_23-65
CI=0.65


[66-86]:
1bgf0_PU1_66-86
CI=0.61


[87-108]:
1bgf0_PU1_87-108
CI=0.25


[109-124 ]:
1bgf0_PU1_109-124
CI=0.00


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-22]:
1bgf0_PU_1-22
CI=0.00


[23-42]:
1bgf0_PU_23-42
CI=0.37


[43-65]:
1bgf0_PU_43-65
CI=0.48


[66-86]:
1bgf0_PU_66-86
CI=0.61


[87-108]:
1bgf0_PU_87-108
CI=0.25


[109-124 ]:
1bgf0_PU_109-124
CI=0.00