Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-223]:
1bhe0_PU0_1-223
CI=6.44


[224-376 ]:
1bhe0_PU0_224-376
CI=6.45


Level 1
PU
Molecule needs Java 1.4 Structure


[1-74]:
1bhe0_PU1_1-74
CI=3.69


[75-223]:
1bhe0_PU1_75-223
CI=6.26


[224-376 ]:
1bhe0_PU1_224-376
CI=6.45


Level 2
PU
Molecule needs Java 1.4 Structure


[1-74]:
1bhe0_PU2_1-74
CI=3.69


[75-151]:
1bhe0_PU2_75-151
CI=3.16


[152-223]:
1bhe0_PU2_152-223
CI=6.27


[224-376 ]:
1bhe0_PU2_224-376
CI=6.45


Level 3
PU
Molecule needs Java 1.4 Structure


[1-74]:
1bhe0_PU3_1-74
CI=3.69


[75-101]:
1bhe0_PU3_75-101
CI=2.17


[102-119]:
1bhe0_PU3_102-119
CI=0.20


[120-151]:
1bhe0_PU3_120-151
CI=1.64


[152-223]:
1bhe0_PU3_152-223
CI=6.27


[224-376 ]:
1bhe0_PU3_224-376
CI=6.45


Level 4
PU
Molecule needs Java 1.4 Structure


[1-74]:
1bhe0_PU4_1-74
CI=3.69


[75-101]:
1bhe0_PU4_75-101
CI=2.17


[102-119]:
1bhe0_PU4_102-119
CI=0.20


[120-151]:
1bhe0_PU4_120-151
CI=1.64


[152-223]:
1bhe0_PU4_152-223
CI=6.27


[224-328]:
1bhe0_PU4_224-328
CI=6.04


[329-376 ]:
1bhe0_PU4_329-376
CI=3.74


Level 5
PU
Molecule needs Java 1.4 Structure


[1-18]:
1bhe0_PU5_1-18
CI=0.00


[19-74]:
1bhe0_PU5_19-74
CI=3.61


[75-101]:
1bhe0_PU5_75-101
CI=2.17


[102-119]:
1bhe0_PU5_102-119
CI=0.20


[120-151]:
1bhe0_PU5_120-151
CI=1.64


[152-223]:
1bhe0_PU5_152-223
CI=6.27


[224-328]:
1bhe0_PU5_224-328
CI=6.04


[329-376 ]:
1bhe0_PU5_329-376
CI=3.74


Level 6
PU
Molecule needs Java 1.4 Structure


[1-18]:
1bhe0_PU6_1-18
CI=0.00


[19-74]:
1bhe0_PU6_19-74
CI=3.61


[75-101]:
1bhe0_PU6_75-101
CI=2.17


[102-119]:
1bhe0_PU6_102-119
CI=0.20


[120-151]:
1bhe0_PU6_120-151
CI=1.64


[152-223]:
1bhe0_PU6_152-223
CI=6.27


[224-271]:
1bhe0_PU6_224-271
CI=3.94


[272-328]:
1bhe0_PU6_272-328
CI=4.00


[329-376 ]:
1bhe0_PU6_329-376
CI=3.74


Level 7
PU
Molecule needs Java 1.4 Structure


[1-18]:
1bhe0_PU7_1-18
CI=0.00


[19-74]:
1bhe0_PU7_19-74
CI=3.61


[75-101]:
1bhe0_PU7_75-101
CI=2.17


[102-119]:
1bhe0_PU7_102-119
CI=0.20


[120-151]:
1bhe0_PU7_120-151
CI=1.64


[152-185]:
1bhe0_PU7_152-185
CI=3.13


[186-223]:
1bhe0_PU7_186-223
CI=3.82


[224-271]:
1bhe0_PU7_224-271
CI=3.94


[272-328]:
1bhe0_PU7_272-328
CI=4.00


[329-376 ]:
1bhe0_PU7_329-376
CI=3.74


Level 8
PU
Molecule needs Java 1.4 Structure


[1-18]:
1bhe0_PU8_1-18
CI=0.00


[19-36]:
1bhe0_PU8_19-36
CI=0.00


[37-74]:
1bhe0_PU8_37-74
CI=2.52


[75-101]:
1bhe0_PU8_75-101
CI=2.17


[102-119]:
1bhe0_PU8_102-119
CI=0.20


[120-151]:
1bhe0_PU8_120-151
CI=1.64


[152-185]:
1bhe0_PU8_152-185
CI=3.13


[186-223]:
1bhe0_PU8_186-223
CI=3.82


[224-271]:
1bhe0_PU8_224-271
CI=3.94


[272-328]:
1bhe0_PU8_272-328
CI=4.00


[329-376 ]:
1bhe0_PU8_329-376
CI=3.74


Level 9
PU
Molecule needs Java 1.4 Structure


[1-18]:
1bhe0_PU9_1-18
CI=0.00


[19-36]:
1bhe0_PU9_19-36
CI=0.00


[37-74]:
1bhe0_PU9_37-74
CI=2.52


[75-101]:
1bhe0_PU9_75-101
CI=2.17


[102-119]:
1bhe0_PU9_102-119
CI=0.20


[120-151]:
1bhe0_PU9_120-151
CI=1.64


[152-185]:
1bhe0_PU9_152-185
CI=3.13


[186-223]:
1bhe0_PU9_186-223
CI=3.82


[224-271]:
1bhe0_PU9_224-271
CI=3.94


[272-310]:
1bhe0_PU9_272-310
CI=2.31


[311-328]:
1bhe0_PU9_311-328
CI=0.10


[329-376 ]:
1bhe0_PU9_329-376
CI=3.74


Level 10
PU
Molecule needs Java 1.4 Structure


[1-18]:
1bhe0_PU10_1-18
CI=0.00


[19-36]:
1bhe0_PU10_19-36
CI=0.00


[37-74]:
1bhe0_PU10_37-74
CI=2.52


[75-101]:
1bhe0_PU10_75-101
CI=2.17


[102-119]:
1bhe0_PU10_102-119
CI=0.20


[120-151]:
1bhe0_PU10_120-151
CI=1.64


[152-185]:
1bhe0_PU10_152-185
CI=3.13


[186-223]:
1bhe0_PU10_186-223
CI=3.82


[224-271]:
1bhe0_PU10_224-271
CI=3.94


[272-294]:
1bhe0_PU10_272-294
CI=0.16


[295-310]:
1bhe0_PU10_295-310
CI=0.12


[311-328]:
1bhe0_PU10_311-328
CI=0.10


[329-376 ]:
1bhe0_PU10_329-376
CI=3.74


Level 11
PU
Molecule needs Java 1.4 Structure


[1-18]:
1bhe0_PU11_1-18
CI=0.00


[19-36]:
1bhe0_PU11_19-36
CI=0.00


[37-53]:
1bhe0_PU11_37-53
CI=0.20


[54-74]:
1bhe0_PU11_54-74
CI=0.26


[75-101]:
1bhe0_PU11_75-101
CI=2.17


[102-119]:
1bhe0_PU11_102-119
CI=0.20


[120-151]:
1bhe0_PU11_120-151
CI=1.64


[152-185]:
1bhe0_PU11_152-185
CI=3.13


[186-223]:
1bhe0_PU11_186-223
CI=3.82


[224-271]:
1bhe0_PU11_224-271
CI=3.94


[272-294]:
1bhe0_PU11_272-294
CI=0.16


[295-310]:
1bhe0_PU11_295-310
CI=0.12


[311-328]:
1bhe0_PU11_311-328
CI=0.10


[329-376 ]:
1bhe0_PU11_329-376
CI=3.74


Final level 12

PU
Molecule needs Java 1.4 Structure


[1-18]:
1bhe0_PU_1-18
CI=0.00


[19-36]:
1bhe0_PU_19-36
CI=0.00


[37-53]:
1bhe0_PU_37-53
CI=0.20


[54-74]:
1bhe0_PU_54-74
CI=0.26


[75-101]:
1bhe0_PU_75-101
CI=2.17


[102-119]:
1bhe0_PU_102-119
CI=0.20


[120-151]:
1bhe0_PU_120-151
CI=1.64


[152-185]:
1bhe0_PU_152-185
CI=3.13


[186-223]:
1bhe0_PU_186-223
CI=3.82


[224-240]:
1bhe0_PU_224-240
CI=0.43


[241-271]:
1bhe0_PU_241-271
CI=1.72


[272-294]:
1bhe0_PU_272-294
CI=0.16


[295-310]:
1bhe0_PU_295-310
CI=0.12


[311-328]:
1bhe0_PU_311-328
CI=0.10


[329-376 ]:
1bhe0_PU_329-376
CI=3.74