Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-22]:
1bkf0_PU0_1-22
CI=0.09


[23-48]:
1bkf0_PU0_23-48
CI=2.56


[49-107 ]:
1bkf0_PU0_49-107
CI=3.10


Level 1
PU
Molecule needs Java 1.4 Structure


[1-22]:
1bkf0_PU1_1-22
CI=0.09


[23-48]:
1bkf0_PU1_23-48
CI=2.56


[49-65]:
1bkf0_PU1_49-65
CI=0.42


[66-107 ]:
1bkf0_PU1_66-107
CI=3.28


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-22]:
1bkf0_PU_1-22
CI=0.09


[23-48]:
1bkf0_PU_23-48
CI=2.56


[49-65]:
1bkf0_PU_49-65
CI=0.42


[66-82]:
1bkf0_PU_66-82
CI=0.10


[83-107 ]:
1bkf0_PU_83-107
CI=0.99