Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-24]:
1bkra_PU0_1-24
CI=0.46


[25-108 ]:
1bkra_PU0_25-108
CI=2.99


Level 1
PU
Molecule needs Java 1.4 Structure


[1-24]:
1bkra_PU1_1-24
CI=0.46


[25-89]:
1bkra_PU1_25-89
CI=2.97


[90-108 ]:
1bkra_PU1_90-108
CI=0.00


Level 2
PU
Molecule needs Java 1.4 Structure


[1-24]:
1bkra_PU2_1-24
CI=0.46


[25-40]:
1bkra_PU2_25-40
CI=0.23


[41-56]:
1bkra_PU2_41-56
CI=0.47


[57-89]:
1bkra_PU2_57-89
CI=1.55


[90-108 ]:
1bkra_PU2_90-108
CI=0.00


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-24]:
1bkra_PU_1-24
CI=0.46


[25-40]:
1bkra_PU_25-40
CI=0.23


[41-56]:
1bkra_PU_41-56
CI=0.47


[57-73]:
1bkra_PU_57-73
CI=0.00


[74-89]:
1bkra_PU_74-89
CI=0.12


[90-108 ]:
1bkra_PU_90-108
CI=0.00