Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-24]:
1bkza_PU0_1-24
CI=0.07


[25-83]:
1bkza_PU0_25-83
CI=4.38


[84-135 ]:
1bkza_PU0_84-135
CI=1.89


Level 1
PU
Molecule needs Java 1.4 Structure


[1-24]:
1bkza_PU1_1-24
CI=0.07


[25-83]:
1bkza_PU1_25-83
CI=4.38


[84-118]:
1bkza_PU1_84-118
CI=2.73


[119-135 ]:
1bkza_PU1_119-135
CI=0.10


Level 2
PU
Molecule needs Java 1.4 Structure


[1-24]:
1bkza_PU2_1-24
CI=0.07


[25-52]:
1bkza_PU2_25-52
CI=2.38


[53-83]:
1bkza_PU2_53-83
CI=2.39


[84-118]:
1bkza_PU2_84-118
CI=2.73


[119-135 ]:
1bkza_PU2_119-135
CI=0.10


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-24]:
1bkza_PU_1-24
CI=0.07


[25-52]:
1bkza_PU_25-52
CI=2.38


[53-83]:
1bkza_PU_53-83
CI=2.39


[84-102]:
1bkza_PU_84-102
CI=2.17


[103-118]:
1bkza_PU_103-118
CI=0.00


[119-135 ]:
1bkza_PU_119-135
CI=0.10