Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-41]:
1bm80_PU0_1-41
CI=3.22


[42-59]:
1bm80_PU0_42-59
CI=0.10


[60-99 ]:
1bm80_PU0_60-99
CI=1.81


Level 1
PU
Molecule needs Java 1.4 Structure


[1-41]:
1bm80_PU1_1-41
CI=3.22


[42-59]:
1bm80_PU1_42-59
CI=0.10


[60-76]:
1bm80_PU1_60-76
CI=2.19


[77-99 ]:
1bm80_PU1_77-99
CI=1.37


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-17]:
1bm80_PU_1-17
CI=2.09


[18-41]:
1bm80_PU_18-41
CI=1.79


[42-59]:
1bm80_PU_42-59
CI=0.10


[60-76]:
1bm80_PU_60-76
CI=2.19


[77-99 ]:
1bm80_PU_77-99
CI=1.37