Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-16]:
1bm9a_PU0_1-16
CI=0.00


[17-98]:
1bm9a_PU0_17-98
CI=2.61


[99-120 ]:
1bm9a_PU0_99-120
CI=0.00


Level 1
PU
Molecule needs Java 1.4 Structure


[1-16]:
1bm9a_PU1_1-16
CI=0.00


[17-32]:
1bm9a_PU1_17-32
CI=0.45


[33-56]:
1bm9a_PU1_33-56
CI=1.08


[57-98]:
1bm9a_PU1_57-98
CI=2.47


[99-120 ]:
1bm9a_PU1_99-120
CI=0.00


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-16]:
1bm9a_PU_1-16
CI=0.00


[17-32]:
1bm9a_PU_17-32
CI=0.45


[33-56]:
1bm9a_PU_33-56
CI=1.08


[57-73]:
1bm9a_PU_57-73
CI=0.43


[74-98]:
1bm9a_PU_74-98
CI=0.53


[99-120 ]:
1bm9a_PU_99-120
CI=0.00