Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-97]:
1bqk0_PU0_1-97
CI=5.65


[98-124 ]:
1bqk0_PU0_98-124
CI=0.33


Level 1
PU
Molecule needs Java 1.4 Structure


[1-38]:
1bqk0_PU1_1-38
CI=3.28


[39-97]:
1bqk0_PU1_39-97
CI=4.24


[98-124 ]:
1bqk0_PU1_98-124
CI=0.33


Level 2
PU
Molecule needs Java 1.4 Structure


[1-38]:
1bqk0_PU2_1-38
CI=3.28


[39-66]:
1bqk0_PU2_39-66
CI=1.96


[67-97]:
1bqk0_PU2_67-97
CI=2.75


[98-124 ]:
1bqk0_PU2_98-124
CI=0.33


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-20]:
1bqk0_PU_1-20
CI=2.35


[21-38]:
1bqk0_PU_21-38
CI=0.10


[39-66]:
1bqk0_PU_39-66
CI=1.96


[67-97]:
1bqk0_PU_67-97
CI=2.75


[98-124 ]:
1bqk0_PU_98-124
CI=0.33