Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-128]:
1brt0_PU0_1-128
CI=4.55


[129-206]:
1brt0_PU0_129-206
CI=1.25


[207-277 ]:
1brt0_PU0_207-277
CI=2.36


Level 1
PU
Molecule needs Java 1.4 Structure


[1-128]:
1brt0_PU1_1-128
CI=4.55


[129-156]:
1brt0_PU1_129-156
CI=1.15


[157-193]:
1brt0_PU1_157-193
CI=0.55


[194-206]:
1brt0_PU1_194-206
CI=0.00


[207-277 ]:
1brt0_PU1_207-277
CI=2.36


Level 2
PU
Molecule needs Java 1.4 Structure


[1-128]:
1brt0_PU2_1-128
CI=4.55


[129-156]:
1brt0_PU2_129-156
CI=1.15


[157-193]:
1brt0_PU2_157-193
CI=0.55


[194-206]:
1brt0_PU2_194-206
CI=0.00


[207-257]:
1brt0_PU2_207-257
CI=2.64


[258-277 ]:
1brt0_PU2_258-277
CI=0.27


Level 3
PU
Molecule needs Java 1.4 Structure


[1-69]:
1brt0_PU3_1-69
CI=4.23


[70-128]:
1brt0_PU3_70-128
CI=3.15


[129-156]:
1brt0_PU3_129-156
CI=1.15


[157-193]:
1brt0_PU3_157-193
CI=0.55


[194-206]:
1brt0_PU3_194-206
CI=0.00


[207-257]:
1brt0_PU3_207-257
CI=2.64


[258-277 ]:
1brt0_PU3_258-277
CI=0.27


Level 4
PU
Molecule needs Java 1.4 Structure


[1-16]:
1brt0_PU4_1-16
CI=2.32


[17-58]:
1brt0_PU4_17-58
CI=3.83


[59-69]:
1brt0_PU4_59-69
CI=0.99


[70-128]:
1brt0_PU4_70-128
CI=3.15


[129-156]:
1brt0_PU4_129-156
CI=1.15


[157-193]:
1brt0_PU4_157-193
CI=0.55


[194-206]:
1brt0_PU4_194-206
CI=0.00


[207-257]:
1brt0_PU4_207-257
CI=2.64


[258-277 ]:
1brt0_PU4_258-277
CI=0.27


Level 5
PU
Molecule needs Java 1.4 Structure


[1-16]:
1brt0_PU5_1-16
CI=2.32


[17-58]:
1brt0_PU5_17-58
CI=3.83


[59-69]:
1brt0_PU5_59-69
CI=0.99


[70-128]:
1brt0_PU5_70-128
CI=3.15


[129-156]:
1brt0_PU5_129-156
CI=1.15


[157-177]:
1brt0_PU5_157-177
CI=0.09


[178-193]:
1brt0_PU5_178-193
CI=0.00


[194-206]:
1brt0_PU5_194-206
CI=0.00


[207-257]:
1brt0_PU5_207-257
CI=2.64


[258-277 ]:
1brt0_PU5_258-277
CI=0.27


Level 6
PU
Molecule needs Java 1.4 Structure


[1-16]:
1brt0_PU6_1-16
CI=2.32


[17-58]:
1brt0_PU6_17-58
CI=3.83


[59-69]:
1brt0_PU6_59-69
CI=0.99


[70-90]:
1brt0_PU6_70-90
CI=0.17


[91-128]:
1brt0_PU6_91-128
CI=2.76


[129-156]:
1brt0_PU6_129-156
CI=1.15


[157-177]:
1brt0_PU6_157-177
CI=0.09


[178-193]:
1brt0_PU6_178-193
CI=0.00


[194-206]:
1brt0_PU6_194-206
CI=0.00


[207-257]:
1brt0_PU6_207-257
CI=2.64


[258-277 ]:
1brt0_PU6_258-277
CI=0.27


Level 7
PU
Molecule needs Java 1.4 Structure


[1-16]:
1brt0_PU7_1-16
CI=2.32


[17-58]:
1brt0_PU7_17-58
CI=3.83


[59-69]:
1brt0_PU7_59-69
CI=0.99


[70-90]:
1brt0_PU7_70-90
CI=0.17


[91-128]:
1brt0_PU7_91-128
CI=2.76


[129-156]:
1brt0_PU7_129-156
CI=1.15


[157-177]:
1brt0_PU7_157-177
CI=0.09


[178-193]:
1brt0_PU7_178-193
CI=0.00


[194-206]:
1brt0_PU7_194-206
CI=0.00


[207-224]:
1brt0_PU7_207-224
CI=0.00


[225-257]:
1brt0_PU7_225-257
CI=2.02


[258-277 ]:
1brt0_PU7_258-277
CI=0.27


Level 8
PU
Molecule needs Java 1.4 Structure


[1-16]:
1brt0_PU8_1-16
CI=2.32


[17-58]:
1brt0_PU8_17-58
CI=3.83


[59-69]:
1brt0_PU8_59-69
CI=0.99


[70-90]:
1brt0_PU8_70-90
CI=0.17


[91-112]:
1brt0_PU8_91-112
CI=0.42


[113-128]:
1brt0_PU8_113-128
CI=0.00


[129-156]:
1brt0_PU8_129-156
CI=1.15


[157-177]:
1brt0_PU8_157-177
CI=0.09


[178-193]:
1brt0_PU8_178-193
CI=0.00


[194-206]:
1brt0_PU8_194-206
CI=0.00


[207-224]:
1brt0_PU8_207-224
CI=0.00


[225-257]:
1brt0_PU8_225-257
CI=2.02


[258-277 ]:
1brt0_PU8_258-277
CI=0.27


Final level 9

PU
Molecule needs Java 1.4 Structure


[1-16]:
1brt0_PU_1-16
CI=2.32


[17-39]:
1brt0_PU_17-39
CI=0.73


[40-58]:
1brt0_PU_40-58
CI=0.48


[59-69]:
1brt0_PU_59-69
CI=0.99


[70-90]:
1brt0_PU_70-90
CI=0.17


[91-112]:
1brt0_PU_91-112
CI=0.42


[113-128]:
1brt0_PU_113-128
CI=0.00


[129-156]:
1brt0_PU_129-156
CI=1.15


[157-177]:
1brt0_PU_157-177
CI=0.09


[178-193]:
1brt0_PU_178-193
CI=0.00


[194-206]:
1brt0_PU_194-206
CI=0.00


[207-224]:
1brt0_PU_207-224
CI=0.00


[225-257]:
1brt0_PU_225-257
CI=2.02


[258-277 ]:
1brt0_PU_258-277
CI=0.27