Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-22]:
1btn0_PU0_1-22
CI=1.28


[23-57]:
1btn0_PU0_23-57
CI=2.93


[58-106 ]:
1btn0_PU0_58-106
CI=3.55


Level 1
PU
Molecule needs Java 1.4 Structure


[1-22]:
1btn0_PU1_1-22
CI=1.28


[23-57]:
1btn0_PU1_23-57
CI=2.93


[58-89]:
1btn0_PU1_58-89
CI=3.49


[90-106 ]:
1btn0_PU1_90-106
CI=0.11


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-22]:
1btn0_PU_1-22
CI=1.28


[23-39]:
1btn0_PU_23-39
CI=1.86


[40-57]:
1btn0_PU_40-57
CI=0.19


[58-89]:
1btn0_PU_58-89
CI=3.49


[90-106 ]:
1btn0_PU_90-106
CI=0.11