Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-165]:
1bx4a_PU0_1-165
CI=4.33


[166-282]:
1bx4a_PU0_166-282
CI=3.53


[283-342 ]:
1bx4a_PU0_283-342
CI=2.43


Level 1
PU
Molecule needs Java 1.4 Structure


[1-165]:
1bx4a_PU1_1-165
CI=4.33


[166-214]:
1bx4a_PU1_166-214
CI=1.99


[215-282]:
1bx4a_PU1_215-282
CI=3.13


[283-342 ]:
1bx4a_PU1_283-342
CI=2.43


Level 2
PU
Molecule needs Java 1.4 Structure


[1-165]:
1bx4a_PU2_1-165
CI=4.33


[166-214]:
1bx4a_PU2_166-214
CI=1.99


[215-282]:
1bx4a_PU2_215-282
CI=3.13


[283-299]:
1bx4a_PU2_283-299
CI=0.00


[300-320]:
1bx4a_PU2_300-320
CI=1.94


[321-342 ]:
1bx4a_PU2_321-342
CI=0.60


Level 3
PU
Molecule needs Java 1.4 Structure


[1-19]:
1bx4a_PU3_1-19
CI=0.00


[20-54]:
1bx4a_PU3_20-54
CI=0.53


[55-165]:
1bx4a_PU3_55-165
CI=2.68


[166-214]:
1bx4a_PU3_166-214
CI=1.99


[215-282]:
1bx4a_PU3_215-282
CI=3.13


[283-299]:
1bx4a_PU3_283-299
CI=0.00


[300-320]:
1bx4a_PU3_300-320
CI=1.94


[321-342 ]:
1bx4a_PU3_321-342
CI=0.60


Level 4
PU
Molecule needs Java 1.4 Structure


[1-19]:
1bx4a_PU4_1-19
CI=0.00


[20-54]:
1bx4a_PU4_20-54
CI=0.53


[55-141]:
1bx4a_PU4_55-141
CI=3.13


[142-165]:
1bx4a_PU4_142-165
CI=0.31


[166-214]:
1bx4a_PU4_166-214
CI=1.99


[215-282]:
1bx4a_PU4_215-282
CI=3.13


[283-299]:
1bx4a_PU4_283-299
CI=0.00


[300-320]:
1bx4a_PU4_300-320
CI=1.94


[321-342 ]:
1bx4a_PU4_321-342
CI=0.60


Level 5
PU
Molecule needs Java 1.4 Structure


[1-19]:
1bx4a_PU5_1-19
CI=0.00


[20-54]:
1bx4a_PU5_20-54
CI=0.53


[55-117]:
1bx4a_PU5_55-117
CI=2.62


[118-141]:
1bx4a_PU5_118-141
CI=2.36


[142-165]:
1bx4a_PU5_142-165
CI=0.31


[166-214]:
1bx4a_PU5_166-214
CI=1.99


[215-282]:
1bx4a_PU5_215-282
CI=3.13


[283-299]:
1bx4a_PU5_283-299
CI=0.00


[300-320]:
1bx4a_PU5_300-320
CI=1.94


[321-342 ]:
1bx4a_PU5_321-342
CI=0.60


Level 6
PU
Molecule needs Java 1.4 Structure


[1-19]:
1bx4a_PU6_1-19
CI=0.00


[20-37]:
1bx4a_PU6_20-37
CI=0.20


[38-54]:
1bx4a_PU6_38-54
CI=0.00


[55-117]:
1bx4a_PU6_55-117
CI=2.62


[118-141]:
1bx4a_PU6_118-141
CI=2.36


[142-165]:
1bx4a_PU6_142-165
CI=0.31


[166-214]:
1bx4a_PU6_166-214
CI=1.99


[215-282]:
1bx4a_PU6_215-282
CI=3.13


[283-299]:
1bx4a_PU6_283-299
CI=0.00


[300-320]:
1bx4a_PU6_300-320
CI=1.94


[321-342 ]:
1bx4a_PU6_321-342
CI=0.60


Level 7
PU
Molecule needs Java 1.4 Structure


[1-19]:
1bx4a_PU7_1-19
CI=0.00


[20-37]:
1bx4a_PU7_20-37
CI=0.20


[38-54]:
1bx4a_PU7_38-54
CI=0.00


[55-78]:
1bx4a_PU7_55-78
CI=0.15


[79-117]:
1bx4a_PU7_79-117
CI=2.94


[118-141]:
1bx4a_PU7_118-141
CI=2.36


[142-165]:
1bx4a_PU7_142-165
CI=0.31


[166-214]:
1bx4a_PU7_166-214
CI=1.99


[215-282]:
1bx4a_PU7_215-282
CI=3.13


[283-299]:
1bx4a_PU7_283-299
CI=0.00


[300-320]:
1bx4a_PU7_300-320
CI=1.94


[321-342 ]:
1bx4a_PU7_321-342
CI=0.60


Level 8
PU
Molecule needs Java 1.4 Structure


[1-19]:
1bx4a_PU8_1-19
CI=0.00


[20-37]:
1bx4a_PU8_20-37
CI=0.20


[38-54]:
1bx4a_PU8_38-54
CI=0.00


[55-78]:
1bx4a_PU8_55-78
CI=0.15


[79-117]:
1bx4a_PU8_79-117
CI=2.94


[118-141]:
1bx4a_PU8_118-141
CI=2.36


[142-165]:
1bx4a_PU8_142-165
CI=0.31


[166-214]:
1bx4a_PU8_166-214
CI=1.99


[215-236]:
1bx4a_PU8_215-236
CI=0.34


[237-282]:
1bx4a_PU8_237-282
CI=2.88


[283-299]:
1bx4a_PU8_283-299
CI=0.00


[300-320]:
1bx4a_PU8_300-320
CI=1.94


[321-342 ]:
1bx4a_PU8_321-342
CI=0.60


Level 9
PU
Molecule needs Java 1.4 Structure


[1-19]:
1bx4a_PU9_1-19
CI=0.00


[20-37]:
1bx4a_PU9_20-37
CI=0.20


[38-54]:
1bx4a_PU9_38-54
CI=0.00


[55-78]:
1bx4a_PU9_55-78
CI=0.15


[79-117]:
1bx4a_PU9_79-117
CI=2.94


[118-141]:
1bx4a_PU9_118-141
CI=2.36


[142-165]:
1bx4a_PU9_142-165
CI=0.31


[166-214]:
1bx4a_PU9_166-214
CI=1.99


[215-236]:
1bx4a_PU9_215-236
CI=0.34


[237-256]:
1bx4a_PU9_237-256
CI=0.09


[257-282]:
1bx4a_PU9_257-282
CI=3.00


[283-299]:
1bx4a_PU9_283-299
CI=0.00


[300-320]:
1bx4a_PU9_300-320
CI=1.94


[321-342 ]:
1bx4a_PU9_321-342
CI=0.60


Final level 10

PU
Molecule needs Java 1.4 Structure


[1-19]:
1bx4a_PU_1-19
CI=0.00


[20-37]:
1bx4a_PU_20-37
CI=0.20


[38-54]:
1bx4a_PU_38-54
CI=0.00


[55-78]:
1bx4a_PU_55-78
CI=0.15


[79-117]:
1bx4a_PU_79-117
CI=2.94


[118-141]:
1bx4a_PU_118-141
CI=2.36


[142-165]:
1bx4a_PU_142-165
CI=0.31


[166-193]:
1bx4a_PU_166-193
CI=0.73


[194-214]:
1bx4a_PU_194-214
CI=0.35


[215-236]:
1bx4a_PU_215-236
CI=0.34


[237-256]:
1bx4a_PU_237-256
CI=0.09


[257-282]:
1bx4a_PU_257-282
CI=3.00


[283-299]:
1bx4a_PU_283-299
CI=0.00


[300-320]:
1bx4a_PU_300-320
CI=1.94


[321-342 ]:
1bx4a_PU_321-342
CI=0.60