Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-27]:
1byfa_PU0_1-27
CI=0.82


[28-110]:
1byfa_PU0_28-110
CI=4.05


[111-123 ]:
1byfa_PU0_111-123
CI=0.00


Level 1
PU
Molecule needs Java 1.4 Structure


[1-27]:
1byfa_PU1_1-27
CI=0.82


[28-49]:
1byfa_PU1_28-49
CI=0.42


[50-110]:
1byfa_PU1_50-110
CI=4.39


[111-123 ]:
1byfa_PU1_111-123
CI=0.00


Level 2
PU
Molecule needs Java 1.4 Structure


[1-27]:
1byfa_PU2_1-27
CI=0.82


[28-49]:
1byfa_PU2_28-49
CI=0.42


[50-75]:
1byfa_PU2_50-75
CI=2.54


[76-110]:
1byfa_PU2_76-110
CI=2.68


[111-123 ]:
1byfa_PU2_111-123
CI=0.00


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-27]:
1byfa_PU_1-27
CI=0.82


[28-49]:
1byfa_PU_28-49
CI=0.42


[50-75]:
1byfa_PU_50-75
CI=2.54


[76-92]:
1byfa_PU_76-92
CI=0.22


[93-110]:
1byfa_PU_93-110
CI=2.70


[111-123 ]:
1byfa_PU_111-123
CI=0.00