Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-147]:
1c1da_PU0_1-147
CI=4.58


[148-340]:
1c1da_PU0_148-340
CI=4.51


[341-349 ]:
1c1da_PU0_341-349
CI=0.00


Level 1
PU
Molecule needs Java 1.4 Structure


[1-147]:
1c1da_PU1_1-147
CI=4.58


[148-164]:
1c1da_PU1_148-164
CI=0.00


[165-281]:
1c1da_PU1_165-281
CI=4.34


[282-340]:
1c1da_PU1_282-340
CI=1.48


[341-349 ]:
1c1da_PU1_341-349
CI=0.00


Level 2
PU
Molecule needs Java 1.4 Structure


[1-147]:
1c1da_PU2_1-147
CI=4.58


[148-164]:
1c1da_PU2_148-164
CI=0.00


[165-281]:
1c1da_PU2_165-281
CI=4.34


[282-316]:
1c1da_PU2_282-316
CI=1.12


[317-340]:
1c1da_PU2_317-340
CI=1.08


[341-349 ]:
1c1da_PU2_341-349
CI=0.00


Level 3
PU
Molecule needs Java 1.4 Structure


[1-90]:
1c1da_PU3_1-90
CI=4.42


[91-147]:
1c1da_PU3_91-147
CI=2.80


[148-164]:
1c1da_PU3_148-164
CI=0.00


[165-281]:
1c1da_PU3_165-281
CI=4.34


[282-316]:
1c1da_PU3_282-316
CI=1.12


[317-340]:
1c1da_PU3_317-340
CI=1.08


[341-349 ]:
1c1da_PU3_341-349
CI=0.00


Level 4
PU
Molecule needs Java 1.4 Structure


[1-90]:
1c1da_PU4_1-90
CI=4.42


[91-147]:
1c1da_PU4_91-147
CI=2.80


[148-164]:
1c1da_PU4_148-164
CI=0.00


[165-228]:
1c1da_PU4_165-228
CI=2.86


[229-281]:
1c1da_PU4_229-281
CI=4.12


[282-316]:
1c1da_PU4_282-316
CI=1.12


[317-340]:
1c1da_PU4_317-340
CI=1.08


[341-349 ]:
1c1da_PU4_341-349
CI=0.00


Level 5
PU
Molecule needs Java 1.4 Structure


[1-90]:
1c1da_PU5_1-90
CI=4.42


[91-147]:
1c1da_PU5_91-147
CI=2.80


[148-164]:
1c1da_PU5_148-164
CI=0.00


[165-203]:
1c1da_PU5_165-203
CI=2.40


[204-228]:
1c1da_PU5_204-228
CI=1.12


[229-281]:
1c1da_PU5_229-281
CI=4.12


[282-316]:
1c1da_PU5_282-316
CI=1.12


[317-340]:
1c1da_PU5_317-340
CI=1.08


[341-349 ]:
1c1da_PU5_341-349
CI=0.00


Level 6
PU
Molecule needs Java 1.4 Structure


[1-90]:
1c1da_PU6_1-90
CI=4.42


[91-111]:
1c1da_PU6_91-111
CI=0.00


[112-147]:
1c1da_PU6_112-147
CI=2.75


[148-164]:
1c1da_PU6_148-164
CI=0.00


[165-203]:
1c1da_PU6_165-203
CI=2.40


[204-228]:
1c1da_PU6_204-228
CI=1.12


[229-281]:
1c1da_PU6_229-281
CI=4.12


[282-316]:
1c1da_PU6_282-316
CI=1.12


[317-340]:
1c1da_PU6_317-340
CI=1.08


[341-349 ]:
1c1da_PU6_341-349
CI=0.00


Level 7
PU
Molecule needs Java 1.4 Structure


[1-90]:
1c1da_PU7_1-90
CI=4.42


[91-111]:
1c1da_PU7_91-111
CI=0.00


[112-147]:
1c1da_PU7_112-147
CI=2.75


[148-164]:
1c1da_PU7_148-164
CI=0.00


[165-181]:
1c1da_PU7_165-181
CI=0.55


[182-203]:
1c1da_PU7_182-203
CI=0.76


[204-228]:
1c1da_PU7_204-228
CI=1.12


[229-281]:
1c1da_PU7_229-281
CI=4.12


[282-316]:
1c1da_PU7_282-316
CI=1.12


[317-340]:
1c1da_PU7_317-340
CI=1.08


[341-349 ]:
1c1da_PU7_341-349
CI=0.00


Level 8
PU
Molecule needs Java 1.4 Structure


[1-90]:
1c1da_PU8_1-90
CI=4.42


[91-111]:
1c1da_PU8_91-111
CI=0.00


[112-147]:
1c1da_PU8_112-147
CI=2.75


[148-164]:
1c1da_PU8_148-164
CI=0.00


[165-181]:
1c1da_PU8_165-181
CI=0.55


[182-203]:
1c1da_PU8_182-203
CI=0.76


[204-228]:
1c1da_PU8_204-228
CI=1.12


[229-281]:
1c1da_PU8_229-281
CI=4.12


[282-300]:
1c1da_PU8_282-300
CI=0.00


[301-316]:
1c1da_PU8_301-316
CI=0.00


[317-340]:
1c1da_PU8_317-340
CI=1.08


[341-349 ]:
1c1da_PU8_341-349
CI=0.00


Level 9
PU
Molecule needs Java 1.4 Structure


[1-21]:
1c1da_PU9_1-21
CI=0.00


[22-82]:
1c1da_PU9_22-82
CI=4.55


[83-90]:
1c1da_PU9_83-90
CI=0.00


[91-111]:
1c1da_PU9_91-111
CI=0.00


[112-147]:
1c1da_PU9_112-147
CI=2.75


[148-164]:
1c1da_PU9_148-164
CI=0.00


[165-181]:
1c1da_PU9_165-181
CI=0.55


[182-203]:
1c1da_PU9_182-203
CI=0.76


[204-228]:
1c1da_PU9_204-228
CI=1.12


[229-281]:
1c1da_PU9_229-281
CI=4.12


[282-300]:
1c1da_PU9_282-300
CI=0.00


[301-316]:
1c1da_PU9_301-316
CI=0.00


[317-340]:
1c1da_PU9_317-340
CI=1.08


[341-349 ]:
1c1da_PU9_341-349
CI=0.00


Final level 10

PU
Molecule needs Java 1.4 Structure


[1-21]:
1c1da_PU_1-21
CI=0.00


[22-82]:
1c1da_PU_22-82
CI=4.55


[83-90]:
1c1da_PU_83-90
CI=0.00


[91-111]:
1c1da_PU_91-111
CI=0.00


[112-147]:
1c1da_PU_112-147
CI=2.75


[148-164]:
1c1da_PU_148-164
CI=0.00


[165-181]:
1c1da_PU_165-181
CI=0.55


[182-203]:
1c1da_PU_182-203
CI=0.76


[204-228]:
1c1da_PU_204-228
CI=1.12


[229-265]:
1c1da_PU_229-265
CI=3.46


[266-281]:
1c1da_PU_266-281
CI=0.56


[282-300]:
1c1da_PU_282-300
CI=0.00


[301-316]:
1c1da_PU_301-316
CI=0.00


[317-340]:
1c1da_PU_317-340
CI=1.08


[341-349 ]:
1c1da_PU_341-349
CI=0.00