Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-60]:
1c2aa_PU0_1-60
CI=4.40


[61-120 ]:
1c2aa_PU0_61-120
CI=4.60


Level 1
PU
Molecule needs Java 1.4 Structure


[1-17]:
1c2aa_PU1_1-17
CI=0.00


[18-52]:
1c2aa_PU1_18-52
CI=3.37


[53-60]:
1c2aa_PU1_53-60
CI=0.00


[61-120 ]:
1c2aa_PU1_61-120
CI=4.60


Level 2
PU
Molecule needs Java 1.4 Structure


[1-17]:
1c2aa_PU2_1-17
CI=0.00


[18-52]:
1c2aa_PU2_18-52
CI=3.37


[53-60]:
1c2aa_PU2_53-60
CI=0.00


[61-76]:
1c2aa_PU2_61-76
CI=0.00


[77-109]:
1c2aa_PU2_77-109
CI=3.02


[110-120 ]:
1c2aa_PU2_110-120
CI=0.00


Level 3
PU
Molecule needs Java 1.4 Structure


[1-17]:
1c2aa_PU3_1-17
CI=0.00


[18-52]:
1c2aa_PU3_18-52
CI=3.37


[53-60]:
1c2aa_PU3_53-60
CI=0.00


[61-76]:
1c2aa_PU3_61-76
CI=0.00


[77-93]:
1c2aa_PU3_77-93
CI=0.00


[94-109]:
1c2aa_PU3_94-109
CI=1.98


[110-120 ]:
1c2aa_PU3_110-120
CI=0.00


Final level 4

PU
Molecule needs Java 1.4 Structure


[1-17]:
1c2aa_PU_1-17
CI=0.00


[18-34]:
1c2aa_PU_18-34
CI=0.00


[35-52]:
1c2aa_PU_35-52
CI=2.08


[53-60]:
1c2aa_PU_53-60
CI=0.00


[61-76]:
1c2aa_PU_61-76
CI=0.00


[77-93]:
1c2aa_PU_77-93
CI=0.00


[94-109]:
1c2aa_PU_94-109
CI=1.98


[110-120 ]:
1c2aa_PU_110-120
CI=0.00