Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-158]:
1c3pa_PU0_1-158
CI=3.72


[159-372 ]:
1c3pa_PU0_159-372
CI=4.09


Level 1
PU
Molecule needs Java 1.4 Structure


[1-158]:
1c3pa_PU1_1-158
CI=3.72


[159-296]:
1c3pa_PU1_159-296
CI=4.58


[297-352]:
1c3pa_PU1_297-352
CI=1.52


[353-372 ]:
1c3pa_PU1_353-372
CI=0.00


Level 2
PU
Molecule needs Java 1.4 Structure


[1-61]:
1c3pa_PU2_1-61
CI=1.33


[62-95]:
1c3pa_PU2_62-95
CI=1.29


[96-158]:
1c3pa_PU2_96-158
CI=2.73


[159-296]:
1c3pa_PU2_159-296
CI=4.58


[297-352]:
1c3pa_PU2_297-352
CI=1.52


[353-372 ]:
1c3pa_PU2_353-372
CI=0.00


Level 3
PU
Molecule needs Java 1.4 Structure


[1-40]:
1c3pa_PU3_1-40
CI=1.15


[41-61]:
1c3pa_PU3_41-61
CI=0.00


[62-95]:
1c3pa_PU3_62-95
CI=1.29


[96-158]:
1c3pa_PU3_96-158
CI=2.73


[159-296]:
1c3pa_PU3_159-296
CI=4.58


[297-352]:
1c3pa_PU3_297-352
CI=1.52


[353-372 ]:
1c3pa_PU3_353-372
CI=0.00


Level 4
PU
Molecule needs Java 1.4 Structure


[1-40]:
1c3pa_PU4_1-40
CI=1.15


[41-61]:
1c3pa_PU4_41-61
CI=0.00


[62-95]:
1c3pa_PU4_62-95
CI=1.29


[96-127]:
1c3pa_PU4_96-127
CI=1.65


[128-158]:
1c3pa_PU4_128-158
CI=2.32


[159-296]:
1c3pa_PU4_159-296
CI=4.58


[297-352]:
1c3pa_PU4_297-352
CI=1.52


[353-372 ]:
1c3pa_PU4_353-372
CI=0.00


Level 5
PU
Molecule needs Java 1.4 Structure


[1-40]:
1c3pa_PU5_1-40
CI=1.15


[41-61]:
1c3pa_PU5_41-61
CI=0.00


[62-95]:
1c3pa_PU5_62-95
CI=1.29


[96-127]:
1c3pa_PU5_96-127
CI=1.65


[128-158]:
1c3pa_PU5_128-158
CI=2.32


[159-296]:
1c3pa_PU5_159-296
CI=4.58


[297-317]:
1c3pa_PU5_297-317
CI=0.27


[318-352]:
1c3pa_PU5_318-352
CI=1.29


[353-372 ]:
1c3pa_PU5_353-372
CI=0.00


Level 6
PU
Molecule needs Java 1.4 Structure


[1-40]:
1c3pa_PU6_1-40
CI=1.15


[41-61]:
1c3pa_PU6_41-61
CI=0.00


[62-95]:
1c3pa_PU6_62-95
CI=1.29


[96-127]:
1c3pa_PU6_96-127
CI=1.65


[128-158]:
1c3pa_PU6_128-158
CI=2.32


[159-222]:
1c3pa_PU6_159-222
CI=4.66


[223-296]:
1c3pa_PU6_223-296
CI=2.42


[297-317]:
1c3pa_PU6_297-317
CI=0.27


[318-352]:
1c3pa_PU6_318-352
CI=1.29


[353-372 ]:
1c3pa_PU6_353-372
CI=0.00


Level 7
PU
Molecule needs Java 1.4 Structure


[1-40]:
1c3pa_PU7_1-40
CI=1.15


[41-61]:
1c3pa_PU7_41-61
CI=0.00


[62-95]:
1c3pa_PU7_62-95
CI=1.29


[96-127]:
1c3pa_PU7_96-127
CI=1.65


[128-158]:
1c3pa_PU7_128-158
CI=2.32


[159-222]:
1c3pa_PU7_159-222
CI=4.66


[223-247]:
1c3pa_PU7_223-247
CI=0.00


[248-296]:
1c3pa_PU7_248-296
CI=2.47


[297-317]:
1c3pa_PU7_297-317
CI=0.27


[318-352]:
1c3pa_PU7_318-352
CI=1.29


[353-372 ]:
1c3pa_PU7_353-372
CI=0.00


Level 8
PU
Molecule needs Java 1.4 Structure


[1-24]:
1c3pa_PU8_1-24
CI=0.48


[25-40]:
1c3pa_PU8_25-40
CI=0.12


[41-61]:
1c3pa_PU8_41-61
CI=0.00


[62-95]:
1c3pa_PU8_62-95
CI=1.29


[96-127]:
1c3pa_PU8_96-127
CI=1.65


[128-158]:
1c3pa_PU8_128-158
CI=2.32


[159-222]:
1c3pa_PU8_159-222
CI=4.66


[223-247]:
1c3pa_PU8_223-247
CI=0.00


[248-296]:
1c3pa_PU8_248-296
CI=2.47


[297-317]:
1c3pa_PU8_297-317
CI=0.27


[318-352]:
1c3pa_PU8_318-352
CI=1.29


[353-372 ]:
1c3pa_PU8_353-372
CI=0.00


Level 9
PU
Molecule needs Java 1.4 Structure


[1-24]:
1c3pa_PU9_1-24
CI=0.48


[25-40]:
1c3pa_PU9_25-40
CI=0.12


[41-61]:
1c3pa_PU9_41-61
CI=0.00


[62-78]:
1c3pa_PU9_62-78
CI=0.43


[79-95]:
1c3pa_PU9_79-95
CI=0.76


[96-127]:
1c3pa_PU9_96-127
CI=1.65


[128-158]:
1c3pa_PU9_128-158
CI=2.32


[159-222]:
1c3pa_PU9_159-222
CI=4.66


[223-247]:
1c3pa_PU9_223-247
CI=0.00


[248-296]:
1c3pa_PU9_248-296
CI=2.47


[297-317]:
1c3pa_PU9_297-317
CI=0.27


[318-352]:
1c3pa_PU9_318-352
CI=1.29


[353-372 ]:
1c3pa_PU9_353-372
CI=0.00


Level 10
PU
Molecule needs Java 1.4 Structure


[1-24]:
1c3pa_PU10_1-24
CI=0.48


[25-40]:
1c3pa_PU10_25-40
CI=0.12


[41-61]:
1c3pa_PU10_41-61
CI=0.00


[62-78]:
1c3pa_PU10_62-78
CI=0.43


[79-95]:
1c3pa_PU10_79-95
CI=0.76


[96-127]:
1c3pa_PU10_96-127
CI=1.65


[128-158]:
1c3pa_PU10_128-158
CI=2.32


[159-222]:
1c3pa_PU10_159-222
CI=4.66


[223-247]:
1c3pa_PU10_223-247
CI=0.00


[248-296]:
1c3pa_PU10_248-296
CI=2.47


[297-317]:
1c3pa_PU10_297-317
CI=0.27


[318-334]:
1c3pa_PU10_318-334
CI=0.00


[335-352]:
1c3pa_PU10_335-352
CI=0.30


[353-372 ]:
1c3pa_PU10_353-372
CI=0.00


Level 11
PU
Molecule needs Java 1.4 Structure


[1-24]:
1c3pa_PU11_1-24
CI=0.48


[25-40]:
1c3pa_PU11_25-40
CI=0.12


[41-61]:
1c3pa_PU11_41-61
CI=0.00


[62-78]:
1c3pa_PU11_62-78
CI=0.43


[79-95]:
1c3pa_PU11_79-95
CI=0.76


[96-127]:
1c3pa_PU11_96-127
CI=1.65


[128-158]:
1c3pa_PU11_128-158
CI=2.32


[159-222]:
1c3pa_PU11_159-222
CI=4.66


[223-247]:
1c3pa_PU11_223-247
CI=0.00


[248-271]:
1c3pa_PU11_248-271
CI=1.64


[272-296]:
1c3pa_PU11_272-296
CI=0.22


[297-317]:
1c3pa_PU11_297-317
CI=0.27


[318-334]:
1c3pa_PU11_318-334
CI=0.00


[335-352]:
1c3pa_PU11_335-352
CI=0.30


[353-372 ]:
1c3pa_PU11_353-372
CI=0.00


Final level 12

PU
Molecule needs Java 1.4 Structure


[1-24]:
1c3pa_PU_1-24
CI=0.48


[25-40]:
1c3pa_PU_25-40
CI=0.12


[41-61]:
1c3pa_PU_41-61
CI=0.00


[62-78]:
1c3pa_PU_62-78
CI=0.43


[79-95]:
1c3pa_PU_79-95
CI=0.76


[96-127]:
1c3pa_PU_96-127
CI=1.65


[128-158]:
1c3pa_PU_128-158
CI=2.32


[159-190]:
1c3pa_PU_159-190
CI=2.56


[191-222]:
1c3pa_PU_191-222
CI=2.44


[223-247]:
1c3pa_PU_223-247
CI=0.00


[248-271]:
1c3pa_PU_248-271
CI=1.64


[272-296]:
1c3pa_PU_272-296
CI=0.22


[297-317]:
1c3pa_PU_297-317
CI=0.27


[318-334]:
1c3pa_PU_318-334
CI=0.00


[335-352]:
1c3pa_PU_335-352
CI=0.30


[353-372 ]:
1c3pa_PU_353-372
CI=0.00