Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-29]:
1c520_PU0_1-29
CI=1.88


[30-131 ]:
1c520_PU0_30-131
CI=3.49


Level 1
PU
Molecule needs Java 1.4 Structure


[1-29]:
1c520_PU1_1-29
CI=1.88


[30-74]:
1c520_PU1_30-74
CI=2.30


[75-110]:
1c520_PU1_75-110
CI=1.84


[111-131 ]:
1c520_PU1_111-131
CI=0.00


Level 2
PU
Molecule needs Java 1.4 Structure


[1-29]:
1c520_PU2_1-29
CI=1.88


[30-47]:
1c520_PU2_30-47
CI=0.82


[48-74]:
1c520_PU2_48-74
CI=3.15


[75-110]:
1c520_PU2_75-110
CI=1.84


[111-131 ]:
1c520_PU2_111-131
CI=0.00


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-29]:
1c520_PU_1-29
CI=1.88


[30-47]:
1c520_PU_30-47
CI=0.82


[48-74]:
1c520_PU_48-74
CI=3.15


[75-91]:
1c520_PU_75-91
CI=0.00


[92-110]:
1c520_PU_92-110
CI=0.19


[111-131 ]:
1c520_PU_111-131
CI=0.00