Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-65]:
1c5ea_PU0_1-65
CI=5.59


[66-95 ]:
1c5ea_PU0_66-95
CI=1.01


Final level 1

PU
Molecule needs Java 1.4 Structure


[1-20]:
1c5ea_PU_1-20
CI=0.00


[21-46]:
1c5ea_PU_21-46
CI=3.92


[47-65]:
1c5ea_PU_47-65
CI=1.37


[66-95 ]:
1c5ea_PU_66-95
CI=1.01