Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-44]:
1c7na_PU0_1-44
CI=1.15


[45-293]:
1c7na_PU0_45-293
CI=3.68


[294-394 ]:
1c7na_PU0_294-394
CI=2.79


Level 1
PU
Molecule needs Java 1.4 Structure


[1-44]:
1c7na_PU1_1-44
CI=1.15


[45-97]:
1c7na_PU1_45-97
CI=0.50


[98-233]:
1c7na_PU1_98-233
CI=3.58


[234-293]:
1c7na_PU1_234-293
CI=1.43


[294-394 ]:
1c7na_PU1_294-394
CI=2.79


Level 2
PU
Molecule needs Java 1.4 Structure


[1-44]:
1c7na_PU2_1-44
CI=1.15


[45-65]:
1c7na_PU2_45-65
CI=0.00


[66-97]:
1c7na_PU2_66-97
CI=0.82


[98-233]:
1c7na_PU2_98-233
CI=3.58


[234-293]:
1c7na_PU2_234-293
CI=1.43


[294-394 ]:
1c7na_PU2_294-394
CI=2.79


Level 3
PU
Molecule needs Java 1.4 Structure


[1-44]:
1c7na_PU3_1-44
CI=1.15


[45-65]:
1c7na_PU3_45-65
CI=0.00


[66-97]:
1c7na_PU3_66-97
CI=0.82


[98-233]:
1c7na_PU3_98-233
CI=3.58


[234-251]:
1c7na_PU3_234-251
CI=2.06


[252-271]:
1c7na_PU3_252-271
CI=0.28


[272-293]:
1c7na_PU3_272-293
CI=0.00


[294-394 ]:
1c7na_PU3_294-394
CI=2.79


Level 4
PU
Molecule needs Java 1.4 Structure


[1-44]:
1c7na_PU4_1-44
CI=1.15


[45-65]:
1c7na_PU4_45-65
CI=0.00


[66-97]:
1c7na_PU4_66-97
CI=0.82


[98-170]:
1c7na_PU4_98-170
CI=2.80


[171-233]:
1c7na_PU4_171-233
CI=2.46


[234-251]:
1c7na_PU4_234-251
CI=2.06


[252-271]:
1c7na_PU4_252-271
CI=0.28


[272-293]:
1c7na_PU4_272-293
CI=0.00


[294-394 ]:
1c7na_PU4_294-394
CI=2.79


Level 5
PU
Molecule needs Java 1.4 Structure


[1-44]:
1c7na_PU5_1-44
CI=1.15


[45-65]:
1c7na_PU5_45-65
CI=0.00


[66-97]:
1c7na_PU5_66-97
CI=0.82


[98-170]:
1c7na_PU5_98-170
CI=2.80


[171-233]:
1c7na_PU5_171-233
CI=2.46


[234-251]:
1c7na_PU5_234-251
CI=2.06


[252-271]:
1c7na_PU5_252-271
CI=0.28


[272-293]:
1c7na_PU5_272-293
CI=0.00


[294-331]:
1c7na_PU5_294-331
CI=1.54


[332-370]:
1c7na_PU5_332-370
CI=2.10


[371-394 ]:
1c7na_PU5_371-394
CI=0.08


Level 6
PU
Molecule needs Java 1.4 Structure


[1-44]:
1c7na_PU6_1-44
CI=1.15


[45-65]:
1c7na_PU6_45-65
CI=0.00


[66-97]:
1c7na_PU6_66-97
CI=0.82


[98-170]:
1c7na_PU6_98-170
CI=2.80


[171-233]:
1c7na_PU6_171-233
CI=2.46


[234-251]:
1c7na_PU6_234-251
CI=2.06


[252-271]:
1c7na_PU6_252-271
CI=0.28


[272-293]:
1c7na_PU6_272-293
CI=0.00


[294-331]:
1c7na_PU6_294-331
CI=1.54


[332-353]:
1c7na_PU6_332-353
CI=0.41


[354-370]:
1c7na_PU6_354-370
CI=2.30


[371-394 ]:
1c7na_PU6_371-394
CI=0.08


Final level 7

PU
Molecule needs Java 1.4 Structure


[1-44]:
1c7na_PU_1-44
CI=1.15


[45-65]:
1c7na_PU_45-65
CI=0.00


[66-97]:
1c7na_PU_66-97
CI=0.82


[98-139]:
1c7na_PU_98-139
CI=2.05


[140-170]:
1c7na_PU_140-170
CI=1.10


[171-233]:
1c7na_PU_171-233
CI=2.46


[234-251]:
1c7na_PU_234-251
CI=2.06


[252-271]:
1c7na_PU_252-271
CI=0.28


[272-293]:
1c7na_PU_272-293
CI=0.00


[294-331]:
1c7na_PU_294-331
CI=1.54


[332-353]:
1c7na_PU_332-353
CI=0.41


[354-370]:
1c7na_PU_354-370
CI=2.30


[371-394 ]:
1c7na_PU_371-394
CI=0.08