Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-115]:
1c8ua_PU0_1-115
CI=3.94


[116-285 ]:
1c8ua_PU0_116-285
CI=4.14


Level 1
PU
Molecule needs Java 1.4 Structure


[1-115]:
1c8ua_PU1_1-115
CI=3.94


[116-139]:
1c8ua_PU1_116-139
CI=0.00


[140-155]:
1c8ua_PU1_140-155
CI=0.11


[156-285 ]:
1c8ua_PU1_156-285
CI=4.71


Level 2
PU
Molecule needs Java 1.4 Structure


[1-115]:
1c8ua_PU2_1-115
CI=3.94


[116-139]:
1c8ua_PU2_116-139
CI=0.00


[140-155]:
1c8ua_PU2_140-155
CI=0.11


[156-184]:
1c8ua_PU2_156-184
CI=2.22


[185-200]:
1c8ua_PU2_185-200
CI=0.34


[201-285 ]:
1c8ua_PU2_201-285
CI=4.00


Level 3
PU
Molecule needs Java 1.4 Structure


[1-45]:
1c8ua_PU3_1-45
CI=1.61


[46-115]:
1c8ua_PU3_46-115
CI=3.72


[116-139]:
1c8ua_PU3_116-139
CI=0.00


[140-155]:
1c8ua_PU3_140-155
CI=0.11


[156-184]:
1c8ua_PU3_156-184
CI=2.22


[185-200]:
1c8ua_PU3_185-200
CI=0.34


[201-285 ]:
1c8ua_PU3_201-285
CI=4.00


Level 4
PU
Molecule needs Java 1.4 Structure


[1-24]:
1c8ua_PU4_1-24
CI=1.17


[25-45]:
1c8ua_PU4_25-45
CI=0.52


[46-115]:
1c8ua_PU4_46-115
CI=3.72


[116-139]:
1c8ua_PU4_116-139
CI=0.00


[140-155]:
1c8ua_PU4_140-155
CI=0.11


[156-184]:
1c8ua_PU4_156-184
CI=2.22


[185-200]:
1c8ua_PU4_185-200
CI=0.34


[201-285 ]:
1c8ua_PU4_201-285
CI=4.00


Level 5
PU
Molecule needs Java 1.4 Structure


[1-24]:
1c8ua_PU5_1-24
CI=1.17


[25-45]:
1c8ua_PU5_25-45
CI=0.52


[46-115]:
1c8ua_PU5_46-115
CI=3.72


[116-139]:
1c8ua_PU5_116-139
CI=0.00


[140-155]:
1c8ua_PU5_140-155
CI=0.11


[156-184]:
1c8ua_PU5_156-184
CI=2.22


[185-200]:
1c8ua_PU5_185-200
CI=0.34


[201-230]:
1c8ua_PU5_201-230
CI=0.50


[231-276]:
1c8ua_PU5_231-276
CI=3.48


[277-285 ]:
1c8ua_PU5_277-285
CI=0.00


Level 6
PU
Molecule needs Java 1.4 Structure


[1-24]:
1c8ua_PU6_1-24
CI=1.17


[25-45]:
1c8ua_PU6_25-45
CI=0.52


[46-63]:
1c8ua_PU6_46-63
CI=0.20


[64-102]:
1c8ua_PU6_64-102
CI=3.00


[103-115]:
1c8ua_PU6_103-115
CI=0.00


[116-139]:
1c8ua_PU6_116-139
CI=0.00


[140-155]:
1c8ua_PU6_140-155
CI=0.11


[156-184]:
1c8ua_PU6_156-184
CI=2.22


[185-200]:
1c8ua_PU6_185-200
CI=0.34


[201-230]:
1c8ua_PU6_201-230
CI=0.50


[231-276]:
1c8ua_PU6_231-276
CI=3.48


[277-285 ]:
1c8ua_PU6_277-285
CI=0.00


Level 7
PU
Molecule needs Java 1.4 Structure


[1-24]:
1c8ua_PU7_1-24
CI=1.17


[25-45]:
1c8ua_PU7_25-45
CI=0.52


[46-63]:
1c8ua_PU7_46-63
CI=0.20


[64-102]:
1c8ua_PU7_64-102
CI=3.00


[103-115]:
1c8ua_PU7_103-115
CI=0.00


[116-139]:
1c8ua_PU7_116-139
CI=0.00


[140-155]:
1c8ua_PU7_140-155
CI=0.11


[156-184]:
1c8ua_PU7_156-184
CI=2.22


[185-200]:
1c8ua_PU7_185-200
CI=0.34


[201-230]:
1c8ua_PU7_201-230
CI=0.50


[231-247]:
1c8ua_PU7_231-247
CI=0.00


[248-276]:
1c8ua_PU7_248-276
CI=2.76


[277-285 ]:
1c8ua_PU7_277-285
CI=0.00


Final level 8

PU
Molecule needs Java 1.4 Structure


[1-24]:
1c8ua_PU_1-24
CI=1.17


[25-45]:
1c8ua_PU_25-45
CI=0.52


[46-63]:
1c8ua_PU_46-63
CI=0.20


[64-80]:
1c8ua_PU_64-80
CI=0.00


[81-102]:
1c8ua_PU_81-102
CI=1.47


[103-115]:
1c8ua_PU_103-115
CI=0.00


[116-139]:
1c8ua_PU_116-139
CI=0.00


[140-155]:
1c8ua_PU_140-155
CI=0.11


[156-184]:
1c8ua_PU_156-184
CI=2.22


[185-200]:
1c8ua_PU_185-200
CI=0.34


[201-230]:
1c8ua_PU_201-230
CI=0.50


[231-247]:
1c8ua_PU_231-247
CI=0.00


[248-276]:
1c8ua_PU_248-276
CI=2.76


[277-285 ]:
1c8ua_PU_277-285
CI=0.00