Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-188]:
1c8za_PU0_1-188
CI=3.54


[189-209]:
1c8za_PU0_189-209
CI=2.17


[210-265 ]:
1c8za_PU0_210-265
CI=2.68


Level 1
PU
Molecule needs Java 1.4 Structure


[1-92]:
1c8za_PU1_1-92
CI=3.12


[93-188]:
1c8za_PU1_93-188
CI=3.36


[189-209]:
1c8za_PU1_189-209
CI=2.17


[210-265 ]:
1c8za_PU1_210-265
CI=2.68


Level 2
PU
Molecule needs Java 1.4 Structure


[1-58]:
1c8za_PU2_1-58
CI=2.16


[59-92]:
1c8za_PU2_59-92
CI=3.24


[93-188]:
1c8za_PU2_93-188
CI=3.36


[189-209]:
1c8za_PU2_189-209
CI=2.17


[210-265 ]:
1c8za_PU2_210-265
CI=2.68


Level 3
PU
Molecule needs Java 1.4 Structure


[1-22]:
1c8za_PU3_1-22
CI=0.09


[23-58]:
1c8za_PU3_23-58
CI=2.92


[59-92]:
1c8za_PU3_59-92
CI=3.24


[93-188]:
1c8za_PU3_93-188
CI=3.36


[189-209]:
1c8za_PU3_189-209
CI=2.17


[210-265 ]:
1c8za_PU3_210-265
CI=2.68


Level 4
PU
Molecule needs Java 1.4 Structure


[1-22]:
1c8za_PU4_1-22
CI=0.09


[23-58]:
1c8za_PU4_23-58
CI=2.92


[59-92]:
1c8za_PU4_59-92
CI=3.24


[93-123]:
1c8za_PU4_93-123
CI=1.23


[124-188]:
1c8za_PU4_124-188
CI=3.21


[189-209]:
1c8za_PU4_189-209
CI=2.17


[210-265 ]:
1c8za_PU4_210-265
CI=2.68


Level 5
PU
Molecule needs Java 1.4 Structure


[1-22]:
1c8za_PU5_1-22
CI=0.09


[23-58]:
1c8za_PU5_23-58
CI=2.92


[59-92]:
1c8za_PU5_59-92
CI=3.24


[93-123]:
1c8za_PU5_93-123
CI=1.23


[124-188]:
1c8za_PU5_124-188
CI=3.21


[189-209]:
1c8za_PU5_189-209
CI=2.17


[210-245]:
1c8za_PU5_210-245
CI=3.04


[246-265 ]:
1c8za_PU5_246-265
CI=0.10


Level 6
PU
Molecule needs Java 1.4 Structure


[1-22]:
1c8za_PU6_1-22
CI=0.09


[23-58]:
1c8za_PU6_23-58
CI=2.92


[59-92]:
1c8za_PU6_59-92
CI=3.24


[93-123]:
1c8za_PU6_93-123
CI=1.23


[124-148]:
1c8za_PU6_124-148
CI=2.11


[149-188]:
1c8za_PU6_149-188
CI=1.62


[189-209]:
1c8za_PU6_189-209
CI=2.17


[210-245]:
1c8za_PU6_210-245
CI=3.04


[246-265 ]:
1c8za_PU6_246-265
CI=0.10


Level 7
PU
Molecule needs Java 1.4 Structure


[1-22]:
1c8za_PU7_1-22
CI=0.09


[23-58]:
1c8za_PU7_23-58
CI=2.92


[59-92]:
1c8za_PU7_59-92
CI=3.24


[93-123]:
1c8za_PU7_93-123
CI=1.23


[124-148]:
1c8za_PU7_124-148
CI=2.11


[149-165]:
1c8za_PU7_149-165
CI=0.99


[166-188]:
1c8za_PU7_166-188
CI=0.88


[189-209]:
1c8za_PU7_189-209
CI=2.17


[210-245]:
1c8za_PU7_210-245
CI=3.04


[246-265 ]:
1c8za_PU7_246-265
CI=0.10


Level 8
PU
Molecule needs Java 1.4 Structure


[1-22]:
1c8za_PU8_1-22
CI=0.09


[23-40]:
1c8za_PU8_23-40
CI=0.10


[41-58]:
1c8za_PU8_41-58
CI=1.76


[59-92]:
1c8za_PU8_59-92
CI=3.24


[93-123]:
1c8za_PU8_93-123
CI=1.23


[124-148]:
1c8za_PU8_124-148
CI=2.11


[149-165]:
1c8za_PU8_149-165
CI=0.99


[166-188]:
1c8za_PU8_166-188
CI=0.88


[189-209]:
1c8za_PU8_189-209
CI=2.17


[210-245]:
1c8za_PU8_210-245
CI=3.04


[246-265 ]:
1c8za_PU8_246-265
CI=0.10


Final level 9

PU
Molecule needs Java 1.4 Structure


[1-22]:
1c8za_PU_1-22
CI=0.09


[23-40]:
1c8za_PU_23-40
CI=0.10


[41-58]:
1c8za_PU_41-58
CI=1.76


[59-75]:
1c8za_PU_59-75
CI=2.19


[76-92]:
1c8za_PU_76-92
CI=0.73


[93-123]:
1c8za_PU_93-123
CI=1.23


[124-148]:
1c8za_PU_124-148
CI=2.11


[149-165]:
1c8za_PU_149-165
CI=0.99


[166-188]:
1c8za_PU_166-188
CI=0.88


[189-209]:
1c8za_PU_189-209
CI=2.17


[210-245]:
1c8za_PU_210-245
CI=3.04


[246-265 ]:
1c8za_PU_246-265
CI=0.10