Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-50]:
1cc8a_PU0_1-50
CI=3.22


[51-72 ]:
1cc8a_PU0_51-72
CI=0.50


Final level 1

PU
Molecule needs Java 1.4 Structure


[1-24]:
1cc8a_PU_1-24
CI=0.23


[25-50]:
1cc8a_PU_25-50
CI=2.54


[51-72 ]:
1cc8a_PU_51-72
CI=0.50