Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-62]:
1ccwa_PU0_1-62
CI=4.03


[63-121]:
1ccwa_PU0_63-121
CI=2.75


[122-137 ]:
1ccwa_PU0_122-137
CI=0.12


Level 1
PU
Molecule needs Java 1.4 Structure


[1-62]:
1ccwa_PU1_1-62
CI=4.03


[63-85]:
1ccwa_PU1_63-85
CI=0.48


[86-121]:
1ccwa_PU1_86-121
CI=2.10


[122-137 ]:
1ccwa_PU1_122-137
CI=0.12


Level 2
PU
Molecule needs Java 1.4 Structure


[1-16]:
1ccwa_PU2_1-16
CI=0.11


[17-40]:
1ccwa_PU2_17-40
CI=0.92


[41-62]:
1ccwa_PU2_41-62
CI=0.42


[63-85]:
1ccwa_PU2_63-85
CI=0.48


[86-121]:
1ccwa_PU2_86-121
CI=2.10


[122-137 ]:
1ccwa_PU2_122-137
CI=0.12


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-16]:
1ccwa_PU_1-16
CI=0.11


[17-40]:
1ccwa_PU_17-40
CI=0.92


[41-62]:
1ccwa_PU_41-62
CI=0.42


[63-85]:
1ccwa_PU_63-85
CI=0.48


[86-102]:
1ccwa_PU_86-102
CI=0.00


[103-121]:
1ccwa_PU_103-121
CI=0.39


[122-137 ]:
1ccwa_PU_122-137
CI=0.12