Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-193]:
1ceo0_PU0_1-193
CI=3.33


[194-246]:
1ceo0_PU0_194-246
CI=2.46


[247-332 ]:
1ceo0_PU0_247-332
CI=2.26


Level 1
PU
Molecule needs Java 1.4 Structure


[1-91]:
1ceo0_PU1_1-91
CI=2.66


[92-193]:
1ceo0_PU1_92-193
CI=2.90


[194-246]:
1ceo0_PU1_194-246
CI=2.46


[247-332 ]:
1ceo0_PU1_247-332
CI=2.26


Level 2
PU
Molecule needs Java 1.4 Structure


[1-91]:
1ceo0_PU2_1-91
CI=2.66


[92-193]:
1ceo0_PU2_92-193
CI=2.90


[194-246]:
1ceo0_PU2_194-246
CI=2.46


[247-266]:
1ceo0_PU2_247-266
CI=0.09


[267-332 ]:
1ceo0_PU2_267-332
CI=2.61


Level 3
PU
Molecule needs Java 1.4 Structure


[1-50]:
1ceo0_PU3_1-50
CI=1.81


[51-69]:
1ceo0_PU3_51-69
CI=1.46


[70-91]:
1ceo0_PU3_70-91
CI=0.42


[92-193]:
1ceo0_PU3_92-193
CI=2.90


[194-246]:
1ceo0_PU3_194-246
CI=2.46


[247-266]:
1ceo0_PU3_247-266
CI=0.09


[267-332 ]:
1ceo0_PU3_267-332
CI=2.61


Level 4
PU
Molecule needs Java 1.4 Structure


[1-50]:
1ceo0_PU4_1-50
CI=1.81


[51-69]:
1ceo0_PU4_51-69
CI=1.46


[70-91]:
1ceo0_PU4_70-91
CI=0.42


[92-108]:
1ceo0_PU4_92-108
CI=1.31


[109-193]:
1ceo0_PU4_109-193
CI=2.93


[194-246]:
1ceo0_PU4_194-246
CI=2.46


[247-266]:
1ceo0_PU4_247-266
CI=0.09


[267-332 ]:
1ceo0_PU4_267-332
CI=2.61


Level 5
PU
Molecule needs Java 1.4 Structure


[1-50]:
1ceo0_PU5_1-50
CI=1.81


[51-69]:
1ceo0_PU5_51-69
CI=1.46


[70-91]:
1ceo0_PU5_70-91
CI=0.42


[92-108]:
1ceo0_PU5_92-108
CI=1.31


[109-193]:
1ceo0_PU5_109-193
CI=2.93


[194-215]:
1ceo0_PU5_194-215
CI=1.53


[216-246]:
1ceo0_PU5_216-246
CI=2.33


[247-266]:
1ceo0_PU5_247-266
CI=0.09


[267-332 ]:
1ceo0_PU5_267-332
CI=2.61


Level 6
PU
Molecule needs Java 1.4 Structure


[1-50]:
1ceo0_PU6_1-50
CI=1.81


[51-69]:
1ceo0_PU6_51-69
CI=1.46


[70-91]:
1ceo0_PU6_70-91
CI=0.42


[92-108]:
1ceo0_PU6_92-108
CI=1.31


[109-193]:
1ceo0_PU6_109-193
CI=2.93


[194-215]:
1ceo0_PU6_194-215
CI=1.53


[216-246]:
1ceo0_PU6_216-246
CI=2.33


[247-266]:
1ceo0_PU6_247-266
CI=0.09


[267-305]:
1ceo0_PU6_267-305
CI=1.95


[306-332 ]:
1ceo0_PU6_306-332
CI=1.60


Level 7
PU
Molecule needs Java 1.4 Structure


[1-50]:
1ceo0_PU7_1-50
CI=1.81


[51-69]:
1ceo0_PU7_51-69
CI=1.46


[70-91]:
1ceo0_PU7_70-91
CI=0.42


[92-108]:
1ceo0_PU7_92-108
CI=1.31


[109-128]:
1ceo0_PU7_109-128
CI=0.09


[129-193]:
1ceo0_PU7_129-193
CI=2.91


[194-215]:
1ceo0_PU7_194-215
CI=1.53


[216-246]:
1ceo0_PU7_216-246
CI=2.33


[247-266]:
1ceo0_PU7_247-266
CI=0.09


[267-305]:
1ceo0_PU7_267-305
CI=1.95


[306-332 ]:
1ceo0_PU7_306-332
CI=1.60


Final level 8

PU
Molecule needs Java 1.4 Structure


[1-50]:
1ceo0_PU_1-50
CI=1.81


[51-69]:
1ceo0_PU_51-69
CI=1.46


[70-91]:
1ceo0_PU_70-91
CI=0.42


[92-108]:
1ceo0_PU_92-108
CI=1.31


[109-128]:
1ceo0_PU_109-128
CI=0.09


[129-144]:
1ceo0_PU_129-144
CI=0.12


[145-160]:
1ceo0_PU_145-160
CI=0.00


[161-193]:
1ceo0_PU_161-193
CI=3.00


[194-215]:
1ceo0_PU_194-215
CI=1.53


[216-246]:
1ceo0_PU_216-246
CI=2.33


[247-266]:
1ceo0_PU_247-266
CI=0.09


[267-305]:
1ceo0_PU_267-305
CI=1.95


[306-332 ]:
1ceo0_PU_306-332
CI=1.60