Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-154]:
1chma_PU0_1-154
CI=3.71


[155-401 ]:
1chma_PU0_155-401
CI=5.09


Level 1
PU
Molecule needs Java 1.4 Structure


[1-154]:
1chma_PU1_1-154
CI=3.71


[155-269]:
1chma_PU1_155-269
CI=4.11


[270-388]:
1chma_PU1_270-388
CI=4.23


[389-401 ]:
1chma_PU1_389-401
CI=0.14


Level 2
PU
Molecule needs Java 1.4 Structure


[1-115]:
1chma_PU2_1-115
CI=3.64


[116-154]:
1chma_PU2_116-154
CI=1.76


[155-269]:
1chma_PU2_155-269
CI=4.11


[270-388]:
1chma_PU2_270-388
CI=4.23


[389-401 ]:
1chma_PU2_389-401
CI=0.14


Level 3
PU
Molecule needs Java 1.4 Structure


[1-17]:
1chma_PU3_1-17
CI=0.00


[18-43]:
1chma_PU3_18-43
CI=0.29


[44-115]:
1chma_PU3_44-115
CI=3.30


[116-154]:
1chma_PU3_116-154
CI=1.76


[155-269]:
1chma_PU3_155-269
CI=4.11


[270-388]:
1chma_PU3_270-388
CI=4.23


[389-401 ]:
1chma_PU3_389-401
CI=0.14


Level 4
PU
Molecule needs Java 1.4 Structure


[1-17]:
1chma_PU4_1-17
CI=0.00


[18-43]:
1chma_PU4_18-43
CI=0.29


[44-115]:
1chma_PU4_44-115
CI=3.30


[116-154]:
1chma_PU4_116-154
CI=1.76


[155-171]:
1chma_PU4_155-171
CI=0.00


[172-269]:
1chma_PU4_172-269
CI=4.54


[270-388]:
1chma_PU4_270-388
CI=4.23


[389-401 ]:
1chma_PU4_389-401
CI=0.14


Level 5
PU
Molecule needs Java 1.4 Structure


[1-17]:
1chma_PU5_1-17
CI=0.00


[18-43]:
1chma_PU5_18-43
CI=0.29


[44-97]:
1chma_PU5_44-97
CI=3.41


[98-115]:
1chma_PU5_98-115
CI=0.62


[116-154]:
1chma_PU5_116-154
CI=1.76


[155-171]:
1chma_PU5_155-171
CI=0.00


[172-269]:
1chma_PU5_172-269
CI=4.54


[270-388]:
1chma_PU5_270-388
CI=4.23


[389-401 ]:
1chma_PU5_389-401
CI=0.14


Level 6
PU
Molecule needs Java 1.4 Structure


[1-17]:
1chma_PU6_1-17
CI=0.00


[18-43]:
1chma_PU6_18-43
CI=0.29


[44-97]:
1chma_PU6_44-97
CI=3.41


[98-115]:
1chma_PU6_98-115
CI=0.62


[116-154]:
1chma_PU6_116-154
CI=1.76


[155-171]:
1chma_PU6_155-171
CI=0.00


[172-269]:
1chma_PU6_172-269
CI=4.54


[270-321]:
1chma_PU6_270-321
CI=0.73


[322-339]:
1chma_PU6_322-339
CI=1.54


[340-388]:
1chma_PU6_340-388
CI=3.00


[389-401 ]:
1chma_PU6_389-401
CI=0.14


Level 7
PU
Molecule needs Java 1.4 Structure


[1-17]:
1chma_PU7_1-17
CI=0.00


[18-43]:
1chma_PU7_18-43
CI=0.29


[44-97]:
1chma_PU7_44-97
CI=3.41


[98-115]:
1chma_PU7_98-115
CI=0.62


[116-154]:
1chma_PU7_116-154
CI=1.76


[155-171]:
1chma_PU7_155-171
CI=0.00


[172-269]:
1chma_PU7_172-269
CI=4.54


[270-286]:
1chma_PU7_270-286
CI=0.00


[287-321]:
1chma_PU7_287-321
CI=0.43


[322-339]:
1chma_PU7_322-339
CI=1.54


[340-388]:
1chma_PU7_340-388
CI=3.00


[389-401 ]:
1chma_PU7_389-401
CI=0.14


Level 8
PU
Molecule needs Java 1.4 Structure


[1-17]:
1chma_PU8_1-17
CI=0.00


[18-43]:
1chma_PU8_18-43
CI=0.29


[44-97]:
1chma_PU8_44-97
CI=3.41


[98-115]:
1chma_PU8_98-115
CI=0.62


[116-154]:
1chma_PU8_116-154
CI=1.76


[155-171]:
1chma_PU8_155-171
CI=0.00


[172-269]:
1chma_PU8_172-269
CI=4.54


[270-286]:
1chma_PU8_270-286
CI=0.00


[287-304]:
1chma_PU8_287-304
CI=0.41


[305-321]:
1chma_PU8_305-321
CI=0.32


[322-339]:
1chma_PU8_322-339
CI=1.54


[340-388]:
1chma_PU8_340-388
CI=3.00


[389-401 ]:
1chma_PU8_389-401
CI=0.14


Final level 9

PU
Molecule needs Java 1.4 Structure


[1-17]:
1chma_PU_1-17
CI=0.00


[18-43]:
1chma_PU_18-43
CI=0.29


[44-97]:
1chma_PU_44-97
CI=3.41


[98-115]:
1chma_PU_98-115
CI=0.62


[116-154]:
1chma_PU_116-154
CI=1.76


[155-171]:
1chma_PU_155-171
CI=0.00


[172-198]:
1chma_PU_172-198
CI=1.32


[199-215]:
1chma_PU_199-215
CI=0.53


[216-269]:
1chma_PU_216-269
CI=3.67


[270-286]:
1chma_PU_270-286
CI=0.00


[287-304]:
1chma_PU_287-304
CI=0.41


[305-321]:
1chma_PU_305-321
CI=0.32


[322-339]:
1chma_PU_322-339
CI=1.54


[340-388]:
1chma_PU_340-388
CI=3.00


[389-401 ]:
1chma_PU_389-401
CI=0.14