Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-66]:
1ci9a_PU0_1-66
CI=2.39


[67-193]:
1ci9a_PU0_67-193
CI=3.09


[194-377 ]:
1ci9a_PU0_194-377
CI=3.81


Level 1
PU
Molecule needs Java 1.4 Structure


[1-66]:
1ci9a_PU1_1-66
CI=2.39


[67-193]:
1ci9a_PU1_67-193
CI=3.09


[194-283]:
1ci9a_PU1_194-283
CI=2.42


[284-335]:
1ci9a_PU1_284-335
CI=4.31


[336-377 ]:
1ci9a_PU1_336-377
CI=2.65


Level 2
PU
Molecule needs Java 1.4 Structure


[1-66]:
1ci9a_PU2_1-66
CI=2.39


[67-193]:
1ci9a_PU2_67-193
CI=3.09


[194-215]:
1ci9a_PU2_194-215
CI=0.17


[216-245]:
1ci9a_PU2_216-245
CI=2.41


[246-283]:
1ci9a_PU2_246-283
CI=0.44


[284-335]:
1ci9a_PU2_284-335
CI=4.31


[336-377 ]:
1ci9a_PU2_336-377
CI=2.65


Level 3
PU
Molecule needs Java 1.4 Structure


[1-66]:
1ci9a_PU3_1-66
CI=2.39


[67-193]:
1ci9a_PU3_67-193
CI=3.09


[194-215]:
1ci9a_PU3_194-215
CI=0.17


[216-245]:
1ci9a_PU3_216-245
CI=2.41


[246-264]:
1ci9a_PU3_246-264
CI=0.76


[265-283]:
1ci9a_PU3_265-283
CI=0.10


[284-335]:
1ci9a_PU3_284-335
CI=4.31


[336-377 ]:
1ci9a_PU3_336-377
CI=2.65


Level 4
PU
Molecule needs Java 1.4 Structure


[1-66]:
1ci9a_PU4_1-66
CI=2.39


[67-118]:
1ci9a_PU4_67-118
CI=1.54


[119-155]:
1ci9a_PU4_119-155
CI=1.49


[156-193]:
1ci9a_PU4_156-193
CI=0.45


[194-215]:
1ci9a_PU4_194-215
CI=0.17


[216-245]:
1ci9a_PU4_216-245
CI=2.41


[246-264]:
1ci9a_PU4_246-264
CI=0.76


[265-283]:
1ci9a_PU4_265-283
CI=0.10


[284-335]:
1ci9a_PU4_284-335
CI=4.31


[336-377 ]:
1ci9a_PU4_336-377
CI=2.65


Level 5
PU
Molecule needs Java 1.4 Structure


[1-66]:
1ci9a_PU5_1-66
CI=2.39


[67-118]:
1ci9a_PU5_67-118
CI=1.54


[119-155]:
1ci9a_PU5_119-155
CI=1.49


[156-172]:
1ci9a_PU5_156-172
CI=0.00


[173-193]:
1ci9a_PU5_173-193
CI=0.79


[194-215]:
1ci9a_PU5_194-215
CI=0.17


[216-245]:
1ci9a_PU5_216-245
CI=2.41


[246-264]:
1ci9a_PU5_246-264
CI=0.76


[265-283]:
1ci9a_PU5_265-283
CI=0.10


[284-335]:
1ci9a_PU5_284-335
CI=4.31


[336-377 ]:
1ci9a_PU5_336-377
CI=2.65


Level 6
PU
Molecule needs Java 1.4 Structure


[1-21]:
1ci9a_PU6_1-21
CI=0.17


[22-66]:
1ci9a_PU6_22-66
CI=2.93


[67-118]:
1ci9a_PU6_67-118
CI=1.54


[119-155]:
1ci9a_PU6_119-155
CI=1.49


[156-172]:
1ci9a_PU6_156-172
CI=0.00


[173-193]:
1ci9a_PU6_173-193
CI=0.79


[194-215]:
1ci9a_PU6_194-215
CI=0.17


[216-245]:
1ci9a_PU6_216-245
CI=2.41


[246-264]:
1ci9a_PU6_246-264
CI=0.76


[265-283]:
1ci9a_PU6_265-283
CI=0.10


[284-335]:
1ci9a_PU6_284-335
CI=4.31


[336-377 ]:
1ci9a_PU6_336-377
CI=2.65


Level 7
PU
Molecule needs Java 1.4 Structure


[1-21]:
1ci9a_PU7_1-21
CI=0.17


[22-66]:
1ci9a_PU7_22-66
CI=2.93


[67-83]:
1ci9a_PU7_67-83
CI=0.54


[84-118]:
1ci9a_PU7_84-118
CI=1.46


[119-155]:
1ci9a_PU7_119-155
CI=1.49


[156-172]:
1ci9a_PU7_156-172
CI=0.00


[173-193]:
1ci9a_PU7_173-193
CI=0.79


[194-215]:
1ci9a_PU7_194-215
CI=0.17


[216-245]:
1ci9a_PU7_216-245
CI=2.41


[246-264]:
1ci9a_PU7_246-264
CI=0.76


[265-283]:
1ci9a_PU7_265-283
CI=0.10


[284-335]:
1ci9a_PU7_284-335
CI=4.31


[336-377 ]:
1ci9a_PU7_336-377
CI=2.65


Level 8
PU
Molecule needs Java 1.4 Structure


[1-21]:
1ci9a_PU8_1-21
CI=0.17


[22-50]:
1ci9a_PU8_22-50
CI=3.13


[51-66]:
1ci9a_PU8_51-66
CI=0.00


[67-83]:
1ci9a_PU8_67-83
CI=0.54


[84-118]:
1ci9a_PU8_84-118
CI=1.46


[119-155]:
1ci9a_PU8_119-155
CI=1.49


[156-172]:
1ci9a_PU8_156-172
CI=0.00


[173-193]:
1ci9a_PU8_173-193
CI=0.79


[194-215]:
1ci9a_PU8_194-215
CI=0.17


[216-245]:
1ci9a_PU8_216-245
CI=2.41


[246-264]:
1ci9a_PU8_246-264
CI=0.76


[265-283]:
1ci9a_PU8_265-283
CI=0.10


[284-335]:
1ci9a_PU8_284-335
CI=4.31


[336-377 ]:
1ci9a_PU8_336-377
CI=2.65


Final level 9

PU
Molecule needs Java 1.4 Structure


[1-21]:
1ci9a_PU_1-21
CI=0.17


[22-50]:
1ci9a_PU_22-50
CI=3.13


[51-66]:
1ci9a_PU_51-66
CI=0.00


[67-83]:
1ci9a_PU_67-83
CI=0.54


[84-102]:
1ci9a_PU_84-102
CI=0.59


[103-118]:
1ci9a_PU_103-118
CI=0.45


[119-155]:
1ci9a_PU_119-155
CI=1.49


[156-172]:
1ci9a_PU_156-172
CI=0.00


[173-193]:
1ci9a_PU_173-193
CI=0.79


[194-215]:
1ci9a_PU_194-215
CI=0.17


[216-245]:
1ci9a_PU_216-245
CI=2.41


[246-264]:
1ci9a_PU_246-264
CI=0.76


[265-283]:
1ci9a_PU_265-283
CI=0.10


[284-335]:
1ci9a_PU_284-335
CI=4.31


[336-377 ]:
1ci9a_PU_336-377
CI=2.65