Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-94]:
1cl8a_PU0_1-94
CI=2.64


[95-230]:
1cl8a_PU0_95-230
CI=3.84


[231-261 ]:
1cl8a_PU0_231-261
CI=0.00


Level 1
PU
Molecule needs Java 1.4 Structure


[1-46]:
1cl8a_PU1_1-46
CI=0.69


[47-71]:
1cl8a_PU1_47-71
CI=1.12


[72-94]:
1cl8a_PU1_72-94
CI=2.63


[95-230]:
1cl8a_PU1_95-230
CI=3.84


[231-261 ]:
1cl8a_PU1_231-261
CI=0.00


Level 2
PU
Molecule needs Java 1.4 Structure


[1-17]:
1cl8a_PU2_1-17
CI=0.00


[18-46]:
1cl8a_PU2_18-46
CI=0.71


[47-71]:
1cl8a_PU2_47-71
CI=1.12


[72-94]:
1cl8a_PU2_72-94
CI=2.63


[95-230]:
1cl8a_PU2_95-230
CI=3.84


[231-261 ]:
1cl8a_PU2_231-261
CI=0.00


Level 3
PU
Molecule needs Java 1.4 Structure


[1-17]:
1cl8a_PU3_1-17
CI=0.00


[18-46]:
1cl8a_PU3_18-46
CI=0.71


[47-71]:
1cl8a_PU3_47-71
CI=1.12


[72-94]:
1cl8a_PU3_72-94
CI=2.63


[95-187]:
1cl8a_PU3_95-187
CI=2.62


[188-222]:
1cl8a_PU3_188-222
CI=2.72


[223-230]:
1cl8a_PU3_223-230
CI=0.22


[231-261 ]:
1cl8a_PU3_231-261
CI=0.00


Level 4
PU
Molecule needs Java 1.4 Structure


[1-17]:
1cl8a_PU4_1-17
CI=0.00


[18-46]:
1cl8a_PU4_18-46
CI=0.71


[47-71]:
1cl8a_PU4_47-71
CI=1.12


[72-94]:
1cl8a_PU4_72-94
CI=2.63


[95-130]:
1cl8a_PU4_95-130
CI=1.20


[131-147]:
1cl8a_PU4_131-147
CI=0.32


[148-187]:
1cl8a_PU4_148-187
CI=2.05


[188-222]:
1cl8a_PU4_188-222
CI=2.72


[223-230]:
1cl8a_PU4_223-230
CI=0.22


[231-261 ]:
1cl8a_PU4_231-261
CI=0.00


Level 5
PU
Molecule needs Java 1.4 Structure


[1-17]:
1cl8a_PU5_1-17
CI=0.00


[18-46]:
1cl8a_PU5_18-46
CI=0.71


[47-71]:
1cl8a_PU5_47-71
CI=1.12


[72-94]:
1cl8a_PU5_72-94
CI=2.63


[95-111]:
1cl8a_PU5_95-111
CI=0.10


[112-130]:
1cl8a_PU5_112-130
CI=0.68


[131-147]:
1cl8a_PU5_131-147
CI=0.32


[148-187]:
1cl8a_PU5_148-187
CI=2.05


[188-222]:
1cl8a_PU5_188-222
CI=2.72


[223-230]:
1cl8a_PU5_223-230
CI=0.22


[231-261 ]:
1cl8a_PU5_231-261
CI=0.00


Level 6
PU
Molecule needs Java 1.4 Structure


[1-17]:
1cl8a_PU6_1-17
CI=0.00


[18-46]:
1cl8a_PU6_18-46
CI=0.71


[47-71]:
1cl8a_PU6_47-71
CI=1.12


[72-94]:
1cl8a_PU6_72-94
CI=2.63


[95-111]:
1cl8a_PU6_95-111
CI=0.10


[112-130]:
1cl8a_PU6_112-130
CI=0.68


[131-147]:
1cl8a_PU6_131-147
CI=0.32


[148-165]:
1cl8a_PU6_148-165
CI=0.00


[166-187]:
1cl8a_PU6_166-187
CI=0.34


[188-222]:
1cl8a_PU6_188-222
CI=2.72


[223-230]:
1cl8a_PU6_223-230
CI=0.22


[231-261 ]:
1cl8a_PU6_231-261
CI=0.00


Final level 7

PU
Molecule needs Java 1.4 Structure


[1-17]:
1cl8a_PU_1-17
CI=0.00


[18-46]:
1cl8a_PU_18-46
CI=0.71


[47-71]:
1cl8a_PU_47-71
CI=1.12


[72-94]:
1cl8a_PU_72-94
CI=2.63


[95-111]:
1cl8a_PU_95-111
CI=0.10


[112-130]:
1cl8a_PU_112-130
CI=0.68


[131-147]:
1cl8a_PU_131-147
CI=0.32


[148-165]:
1cl8a_PU_148-165
CI=0.00


[166-187]:
1cl8a_PU_166-187
CI=0.34


[188-206]:
1cl8a_PU_188-206
CI=0.29


[207-222]:
1cl8a_PU_207-222
CI=0.58


[223-230]:
1cl8a_PU_223-230
CI=0.22


[231-261 ]:
1cl8a_PU_231-261
CI=0.00