Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-73]:
1cm4b_PU0_1-73
CI=1.55


[74-143 ]:
1cm4b_PU0_74-143
CI=1.54


Level 1
PU
Molecule needs Java 1.4 Structure


[1-24]:
1cm4b_PU1_1-24
CI=0.31


[25-59]:
1cm4b_PU1_25-59
CI=1.13


[60-73]:
1cm4b_PU1_60-73
CI=0.00


[74-143 ]:
1cm4b_PU1_74-143
CI=1.54


Level 2
PU
Molecule needs Java 1.4 Structure


[1-24]:
1cm4b_PU2_1-24
CI=0.31


[25-59]:
1cm4b_PU2_25-59
CI=1.13


[60-73]:
1cm4b_PU2_60-73
CI=0.00


[74-97]:
1cm4b_PU2_74-97
CI=0.39


[98-133]:
1cm4b_PU2_98-133
CI=1.26


[134-143 ]:
1cm4b_PU2_134-143
CI=0.00


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-24]:
1cm4b_PU_1-24
CI=0.31


[25-59]:
1cm4b_PU_25-59
CI=1.13


[60-73]:
1cm4b_PU_60-73
CI=0.00


[74-97]:
1cm4b_PU_74-97
CI=0.39


[98-114]:
1cm4b_PU_98-114
CI=0.11


[115-133]:
1cm4b_PU_115-133
CI=0.77


[134-143 ]:
1cm4b_PU_134-143
CI=0.00