Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-21]:
1cmca_PU0_1-21
CI=0.53


[22-54]:
1cmca_PU0_22-54
CI=0.74


[55-104 ]:
1cmca_PU0_55-104
CI=1.58


Level 1
PU
Molecule needs Java 1.4 Structure


[1-21]:
1cmca_PU1_1-21
CI=0.53


[22-54]:
1cmca_PU1_22-54
CI=0.74


[55-71]:
1cmca_PU1_55-71
CI=1.38


[72-104 ]:
1cmca_PU1_72-104
CI=1.02


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-21]:
1cmca_PU_1-21
CI=0.53


[22-38]:
1cmca_PU_22-38
CI=0.00


[39-54]:
1cmca_PU_39-54
CI=1.25


[55-71]:
1cmca_PU_55-71
CI=1.38


[72-104 ]:
1cmca_PU_72-104
CI=1.02