Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-28]:
1cnv0_PU0_1-28
CI=0.59


[29-181]:
1cnv0_PU0_29-181
CI=4.21


[182-283 ]:
1cnv0_PU0_182-283
CI=3.65


Level 1
PU
Molecule needs Java 1.4 Structure


[1-28]:
1cnv0_PU1_1-28
CI=0.59


[29-47]:
1cnv0_PU1_29-47
CI=0.67


[48-64]:
1cnv0_PU1_48-64
CI=1.85


[65-181]:
1cnv0_PU1_65-181
CI=3.52


[182-283 ]:
1cnv0_PU1_182-283
CI=3.65


Level 2
PU
Molecule needs Java 1.4 Structure


[1-28]:
1cnv0_PU2_1-28
CI=0.59


[29-47]:
1cnv0_PU2_29-47
CI=0.67


[48-64]:
1cnv0_PU2_48-64
CI=1.85


[65-103]:
1cnv0_PU2_65-103
CI=0.29


[104-122]:
1cnv0_PU2_104-122
CI=2.82


[123-181]:
1cnv0_PU2_123-181
CI=2.69


[182-283 ]:
1cnv0_PU2_182-283
CI=3.65


Level 3
PU
Molecule needs Java 1.4 Structure


[1-28]:
1cnv0_PU3_1-28
CI=0.59


[29-47]:
1cnv0_PU3_29-47
CI=0.67


[48-64]:
1cnv0_PU3_48-64
CI=1.85


[65-83]:
1cnv0_PU3_65-83
CI=0.38


[84-103]:
1cnv0_PU3_84-103
CI=0.19


[104-122]:
1cnv0_PU3_104-122
CI=2.82


[123-181]:
1cnv0_PU3_123-181
CI=2.69


[182-283 ]:
1cnv0_PU3_182-283
CI=3.65


Level 4
PU
Molecule needs Java 1.4 Structure


[1-28]:
1cnv0_PU4_1-28
CI=0.59


[29-47]:
1cnv0_PU4_29-47
CI=0.67


[48-64]:
1cnv0_PU4_48-64
CI=1.85


[65-83]:
1cnv0_PU4_65-83
CI=0.38


[84-103]:
1cnv0_PU4_84-103
CI=0.19


[104-122]:
1cnv0_PU4_104-122
CI=2.82


[123-181]:
1cnv0_PU4_123-181
CI=2.69


[182-265]:
1cnv0_PU4_182-265
CI=3.58


[266-283 ]:
1cnv0_PU4_266-283
CI=0.30


Level 5
PU
Molecule needs Java 1.4 Structure


[1-28]:
1cnv0_PU5_1-28
CI=0.59


[29-47]:
1cnv0_PU5_29-47
CI=0.67


[48-64]:
1cnv0_PU5_48-64
CI=1.85


[65-83]:
1cnv0_PU5_65-83
CI=0.38


[84-103]:
1cnv0_PU5_84-103
CI=0.19


[104-122]:
1cnv0_PU5_104-122
CI=2.82


[123-140]:
1cnv0_PU5_123-140
CI=0.00


[141-156]:
1cnv0_PU5_141-156
CI=0.11


[157-181]:
1cnv0_PU5_157-181
CI=0.88


[182-265]:
1cnv0_PU5_182-265
CI=3.58


[266-283 ]:
1cnv0_PU5_266-283
CI=0.30


Level 6
PU
Molecule needs Java 1.4 Structure


[1-28]:
1cnv0_PU6_1-28
CI=0.59


[29-47]:
1cnv0_PU6_29-47
CI=0.67


[48-64]:
1cnv0_PU6_48-64
CI=1.85


[65-83]:
1cnv0_PU6_65-83
CI=0.38


[84-103]:
1cnv0_PU6_84-103
CI=0.19


[104-122]:
1cnv0_PU6_104-122
CI=2.82


[123-140]:
1cnv0_PU6_123-140
CI=0.00


[141-156]:
1cnv0_PU6_141-156
CI=0.11


[157-181]:
1cnv0_PU6_157-181
CI=0.88


[182-199]:
1cnv0_PU6_182-199
CI=0.51


[200-218]:
1cnv0_PU6_200-218
CI=0.09


[219-265]:
1cnv0_PU6_219-265
CI=2.01


[266-283 ]:
1cnv0_PU6_266-283
CI=0.30


Final level 7

PU
Molecule needs Java 1.4 Structure


[1-28]:
1cnv0_PU_1-28
CI=0.59


[29-47]:
1cnv0_PU_29-47
CI=0.67


[48-64]:
1cnv0_PU_48-64
CI=1.85


[65-83]:
1cnv0_PU_65-83
CI=0.38


[84-103]:
1cnv0_PU_84-103
CI=0.19


[104-122]:
1cnv0_PU_104-122
CI=2.82


[123-140]:
1cnv0_PU_123-140
CI=0.00


[141-156]:
1cnv0_PU_141-156
CI=0.11


[157-181]:
1cnv0_PU_157-181
CI=0.88


[182-199]:
1cnv0_PU_182-199
CI=0.51


[200-218]:
1cnv0_PU_200-218
CI=0.09


[219-238]:
1cnv0_PU_219-238
CI=0.74


[239-265]:
1cnv0_PU_239-265
CI=0.07


[266-283 ]:
1cnv0_PU_266-283
CI=0.30