Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-104]:
1cnza_PU0_1-104
CI=3.30


[105-262]:
1cnza_PU0_105-262
CI=4.06


[263-363 ]:
1cnza_PU0_263-363
CI=3.29


Level 1
PU
Molecule needs Java 1.4 Structure


[1-104]:
1cnza_PU1_1-104
CI=3.30


[105-147]:
1cnza_PU1_105-147
CI=2.14


[148-163]:
1cnza_PU1_148-163
CI=1.87


[164-262]:
1cnza_PU1_164-262
CI=2.58


[263-363 ]:
1cnza_PU1_263-363
CI=3.29


Level 2
PU
Molecule needs Java 1.4 Structure


[1-20]:
1cnza_PU2_1-20
CI=0.19


[21-36]:
1cnza_PU2_21-36
CI=0.11


[37-104]:
1cnza_PU2_37-104
CI=1.92


[105-147]:
1cnza_PU2_105-147
CI=2.14


[148-163]:
1cnza_PU2_148-163
CI=1.87


[164-262]:
1cnza_PU2_164-262
CI=2.58


[263-363 ]:
1cnza_PU2_263-363
CI=3.29


Level 3
PU
Molecule needs Java 1.4 Structure


[1-20]:
1cnza_PU3_1-20
CI=0.19


[21-36]:
1cnza_PU3_21-36
CI=0.11


[37-104]:
1cnza_PU3_37-104
CI=1.92


[105-147]:
1cnza_PU3_105-147
CI=2.14


[148-163]:
1cnza_PU3_148-163
CI=1.87


[164-262]:
1cnza_PU3_164-262
CI=2.58


[263-320]:
1cnza_PU3_263-320
CI=3.44


[321-363 ]:
1cnza_PU3_321-363
CI=1.50


Level 4
PU
Molecule needs Java 1.4 Structure


[1-20]:
1cnza_PU4_1-20
CI=0.19


[21-36]:
1cnza_PU4_21-36
CI=0.11


[37-104]:
1cnza_PU4_37-104
CI=1.92


[105-147]:
1cnza_PU4_105-147
CI=2.14


[148-163]:
1cnza_PU4_148-163
CI=1.87


[164-225]:
1cnza_PU4_164-225
CI=2.47


[226-262]:
1cnza_PU4_226-262
CI=0.80


[263-320]:
1cnza_PU4_263-320
CI=3.44


[321-363 ]:
1cnza_PU4_321-363
CI=1.50


Level 5
PU
Molecule needs Java 1.4 Structure


[1-20]:
1cnza_PU5_1-20
CI=0.19


[21-36]:
1cnza_PU5_21-36
CI=0.11


[37-104]:
1cnza_PU5_37-104
CI=1.92


[105-147]:
1cnza_PU5_105-147
CI=2.14


[148-163]:
1cnza_PU5_148-163
CI=1.87


[164-225]:
1cnza_PU5_164-225
CI=2.47


[226-244]:
1cnza_PU5_226-244
CI=0.38


[245-262]:
1cnza_PU5_245-262
CI=0.19


[263-320]:
1cnza_PU5_263-320
CI=3.44


[321-363 ]:
1cnza_PU5_321-363
CI=1.50


Level 6
PU
Molecule needs Java 1.4 Structure


[1-20]:
1cnza_PU6_1-20
CI=0.19


[21-36]:
1cnza_PU6_21-36
CI=0.11


[37-104]:
1cnza_PU6_37-104
CI=1.92


[105-147]:
1cnza_PU6_105-147
CI=2.14


[148-163]:
1cnza_PU6_148-163
CI=1.87


[164-225]:
1cnza_PU6_164-225
CI=2.47


[226-244]:
1cnza_PU6_226-244
CI=0.38


[245-262]:
1cnza_PU6_245-262
CI=0.19


[263-304]:
1cnza_PU6_263-304
CI=3.18


[305-320]:
1cnza_PU6_305-320
CI=1.96


[321-363 ]:
1cnza_PU6_321-363
CI=1.50


Level 7
PU
Molecule needs Java 1.4 Structure


[1-20]:
1cnza_PU7_1-20
CI=0.19


[21-36]:
1cnza_PU7_21-36
CI=0.11


[37-75]:
1cnza_PU7_37-75
CI=1.17


[76-104]:
1cnza_PU7_76-104
CI=0.90


[105-147]:
1cnza_PU7_105-147
CI=2.14


[148-163]:
1cnza_PU7_148-163
CI=1.87


[164-225]:
1cnza_PU7_164-225
CI=2.47


[226-244]:
1cnza_PU7_226-244
CI=0.38


[245-262]:
1cnza_PU7_245-262
CI=0.19


[263-304]:
1cnza_PU7_263-304
CI=3.18


[305-320]:
1cnza_PU7_305-320
CI=1.96


[321-363 ]:
1cnza_PU7_321-363
CI=1.50


Final level 8

PU
Molecule needs Java 1.4 Structure


[1-20]:
1cnza_PU_1-20
CI=0.19


[21-36]:
1cnza_PU_21-36
CI=0.11


[37-57]:
1cnza_PU_37-57
CI=1.16


[58-75]:
1cnza_PU_58-75
CI=0.10


[76-104]:
1cnza_PU_76-104
CI=0.90


[105-147]:
1cnza_PU_105-147
CI=2.14


[148-163]:
1cnza_PU_148-163
CI=1.87


[164-225]:
1cnza_PU_164-225
CI=2.47


[226-244]:
1cnza_PU_226-244
CI=0.38


[245-262]:
1cnza_PU_245-262
CI=0.19


[263-304]:
1cnza_PU_263-304
CI=3.18


[305-320]:
1cnza_PU_305-320
CI=1.96


[321-363 ]:
1cnza_PU_321-363
CI=1.50