Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-104]:
1cpo0_PU0_1-104
CI=2.71


[105-267]:
1cpo0_PU0_105-267
CI=2.87


[268-298 ]:
1cpo0_PU0_268-298
CI=0.00


Level 1
PU
Molecule needs Java 1.4 Structure


[1-17]:
1cpo0_PU1_1-17
CI=1.18


[18-104]:
1cpo0_PU1_18-104
CI=2.70


[105-267]:
1cpo0_PU1_105-267
CI=2.87


[268-298 ]:
1cpo0_PU1_268-298
CI=0.00


Level 2
PU
Molecule needs Java 1.4 Structure


[1-17]:
1cpo0_PU2_1-17
CI=1.18


[18-104]:
1cpo0_PU2_18-104
CI=2.70


[105-184]:
1cpo0_PU2_105-184
CI=2.42


[185-240]:
1cpo0_PU2_185-240
CI=1.92


[241-267]:
1cpo0_PU2_241-267
CI=0.63


[268-298 ]:
1cpo0_PU2_268-298
CI=0.00


Level 3
PU
Molecule needs Java 1.4 Structure


[1-17]:
1cpo0_PU3_1-17
CI=1.18


[18-104]:
1cpo0_PU3_18-104
CI=2.70


[105-135]:
1cpo0_PU3_105-135
CI=2.57


[136-160]:
1cpo0_PU3_136-160
CI=1.03


[161-184]:
1cpo0_PU3_161-184
CI=0.23


[185-240]:
1cpo0_PU3_185-240
CI=1.92


[241-267]:
1cpo0_PU3_241-267
CI=0.63


[268-298 ]:
1cpo0_PU3_268-298
CI=0.00


Level 4
PU
Molecule needs Java 1.4 Structure


[1-17]:
1cpo0_PU4_1-17
CI=1.18


[18-48]:
1cpo0_PU4_18-48
CI=1.70


[49-92]:
1cpo0_PU4_49-92
CI=1.55


[93-104]:
1cpo0_PU4_93-104
CI=0.45


[105-135]:
1cpo0_PU4_105-135
CI=2.57


[136-160]:
1cpo0_PU4_136-160
CI=1.03


[161-184]:
1cpo0_PU4_161-184
CI=0.23


[185-240]:
1cpo0_PU4_185-240
CI=1.92


[241-267]:
1cpo0_PU4_241-267
CI=0.63


[268-298 ]:
1cpo0_PU4_268-298
CI=0.00


Level 5
PU
Molecule needs Java 1.4 Structure


[1-17]:
1cpo0_PU5_1-17
CI=1.18


[18-48]:
1cpo0_PU5_18-48
CI=1.70


[49-69]:
1cpo0_PU5_49-69
CI=0.79


[70-92]:
1cpo0_PU5_70-92
CI=1.21


[93-104]:
1cpo0_PU5_93-104
CI=0.45


[105-135]:
1cpo0_PU5_105-135
CI=2.57


[136-160]:
1cpo0_PU5_136-160
CI=1.03


[161-184]:
1cpo0_PU5_161-184
CI=0.23


[185-240]:
1cpo0_PU5_185-240
CI=1.92


[241-267]:
1cpo0_PU5_241-267
CI=0.63


[268-298 ]:
1cpo0_PU5_268-298
CI=0.00


Level 6
PU
Molecule needs Java 1.4 Structure


[1-17]:
1cpo0_PU6_1-17
CI=1.18


[18-48]:
1cpo0_PU6_18-48
CI=1.70


[49-69]:
1cpo0_PU6_49-69
CI=0.79


[70-92]:
1cpo0_PU6_70-92
CI=1.21


[93-104]:
1cpo0_PU6_93-104
CI=0.45


[105-135]:
1cpo0_PU6_105-135
CI=2.57


[136-160]:
1cpo0_PU6_136-160
CI=1.03


[161-184]:
1cpo0_PU6_161-184
CI=0.23


[185-206]:
1cpo0_PU6_185-206
CI=1.87


[207-240]:
1cpo0_PU6_207-240
CI=0.66


[241-267]:
1cpo0_PU6_241-267
CI=0.63


[268-298 ]:
1cpo0_PU6_268-298
CI=0.00


Final level 7

PU
Molecule needs Java 1.4 Structure


[1-17]:
1cpo0_PU_1-17
CI=1.18


[18-48]:
1cpo0_PU_18-48
CI=1.70


[49-69]:
1cpo0_PU_49-69
CI=0.79


[70-92]:
1cpo0_PU_70-92
CI=1.21


[93-104]:
1cpo0_PU_93-104
CI=0.45


[105-135]:
1cpo0_PU_105-135
CI=2.57


[136-160]:
1cpo0_PU_136-160
CI=1.03


[161-184]:
1cpo0_PU_161-184
CI=0.23


[185-206]:
1cpo0_PU_185-206
CI=1.87


[207-224]:
1cpo0_PU_207-224
CI=0.92


[225-240]:
1cpo0_PU_225-240
CI=0.00


[241-267]:
1cpo0_PU_241-267
CI=0.63


[268-298 ]:
1cpo0_PU_268-298
CI=0.00