Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-56]:
1cpq0_PU0_1-56
CI=0.78


[57-129 ]:
1cpq0_PU0_57-129
CI=1.89


Level 1
PU
Molecule needs Java 1.4 Structure


[1-56]:
1cpq0_PU1_1-56
CI=0.78


[57-83]:
1cpq0_PU1_57-83
CI=1.60


[84-120]:
1cpq0_PU1_84-120
CI=1.24


[121-129 ]:
1cpq0_PU1_121-129
CI=0.00


Level 2
PU
Molecule needs Java 1.4 Structure


[1-19]:
1cpq0_PU2_1-19
CI=0.09


[20-56]:
1cpq0_PU2_20-56
CI=0.51


[57-83]:
1cpq0_PU2_57-83
CI=1.60


[84-120]:
1cpq0_PU2_84-120
CI=1.24


[121-129 ]:
1cpq0_PU2_121-129
CI=0.00


Level 3
PU
Molecule needs Java 1.4 Structure


[1-19]:
1cpq0_PU3_1-19
CI=0.09


[20-40]:
1cpq0_PU3_20-40
CI=0.71


[41-56]:
1cpq0_PU3_41-56
CI=0.00


[57-83]:
1cpq0_PU3_57-83
CI=1.60


[84-120]:
1cpq0_PU3_84-120
CI=1.24


[121-129 ]:
1cpq0_PU3_121-129
CI=0.00


Final level 4

PU
Molecule needs Java 1.4 Structure


[1-19]:
1cpq0_PU_1-19
CI=0.09


[20-40]:
1cpq0_PU_20-40
CI=0.71


[41-56]:
1cpq0_PU_41-56
CI=0.00


[57-83]:
1cpq0_PU_57-83
CI=1.60


[84-103]:
1cpq0_PU_84-103
CI=0.00


[104-120]:
1cpq0_PU_104-120
CI=0.00


[121-129 ]:
1cpq0_PU_121-129
CI=0.00