Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-20]:
1cy5a_PU0_1-20
CI=0.09


[21-56]:
1cy5a_PU0_21-56
CI=1.57


[57-92 ]:
1cy5a_PU0_57-92
CI=1.04


Final level 1

PU
Molecule needs Java 1.4 Structure


[1-20]:
1cy5a_PU_1-20
CI=0.09


[21-56]:
1cy5a_PU_21-56
CI=1.57


[57-73]:
1cy5a_PU_57-73
CI=0.43


[74-92 ]:
1cy5a_PU_74-92
CI=0.68