Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-37]:
1czpa_PU0_1-37
CI=2.53


[38-98 ]:
1czpa_PU0_38-98
CI=4.60


Level 1
PU
Molecule needs Java 1.4 Structure


[1-20]:
1czpa_PU1_1-20
CI=2.53


[21-37]:
1czpa_PU1_21-37
CI=0.65


[38-98 ]:
1czpa_PU1_38-98
CI=4.60


Level 2
PU
Molecule needs Java 1.4 Structure


[1-20]:
1czpa_PU2_1-20
CI=2.53


[21-37]:
1czpa_PU2_21-37
CI=0.65


[38-55]:
1czpa_PU2_38-55
CI=1.44


[56-89]:
1czpa_PU2_56-89
CI=2.56


[90-98 ]:
1czpa_PU2_90-98
CI=0.00


Final level 3

PU
Molecule needs Java 1.4 Structure


[1-20]:
1czpa_PU_1-20
CI=2.53


[21-37]:
1czpa_PU_21-37
CI=0.65


[38-55]:
1czpa_PU_38-55
CI=1.44


[56-73]:
1czpa_PU_56-73
CI=0.00


[74-89]:
1czpa_PU_74-89
CI=0.33


[90-98 ]:
1czpa_PU_90-98
CI=0.00