Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-16]:
1d0qa_PU0_1-16
CI=0.11


[17-78]:
1d0qa_PU0_17-78
CI=3.69


[79-102 ]:
1d0qa_PU0_79-102
CI=0.46


Level 1
PU
Molecule needs Java 1.4 Structure


[1-16]:
1d0qa_PU1_1-16
CI=0.11


[17-32]:
1d0qa_PU1_17-32
CI=0.11


[33-67]:
1d0qa_PU1_33-67
CI=3.49


[68-78]:
1d0qa_PU1_68-78
CI=0.00


[79-102 ]:
1d0qa_PU1_79-102
CI=0.46


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-16]:
1d0qa_PU_1-16
CI=0.11


[17-32]:
1d0qa_PU_17-32
CI=0.11


[33-51]:
1d0qa_PU_33-51
CI=2.27


[52-67]:
1d0qa_PU_52-67
CI=1.28


[68-78]:
1d0qa_PU_68-78
CI=0.00


[79-102 ]:
1d0qa_PU_79-102
CI=0.46