Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-172]:
1d2na_PU0_1-172
CI=3.60


[173-246 ]:
1d2na_PU0_173-246
CI=1.54


Level 1
PU
Molecule needs Java 1.4 Structure


[1-172]:
1d2na_PU1_1-172
CI=3.60


[173-208]:
1d2na_PU1_173-208
CI=1.43


[209-246 ]:
1d2na_PU1_209-246
CI=0.80


Level 2
PU
Molecule needs Java 1.4 Structure


[1-64]:
1d2na_PU2_1-64
CI=1.31


[65-130]:
1d2na_PU2_65-130
CI=1.98


[131-172]:
1d2na_PU2_131-172
CI=0.77


[173-208]:
1d2na_PU2_173-208
CI=1.43


[209-246 ]:
1d2na_PU2_209-246
CI=0.80


Level 3
PU
Molecule needs Java 1.4 Structure


[1-22]:
1d2na_PU3_1-22
CI=0.33


[23-45]:
1d2na_PU3_23-45
CI=0.56


[46-64]:
1d2na_PU3_46-64
CI=0.20


[65-130]:
1d2na_PU3_65-130
CI=1.98


[131-172]:
1d2na_PU3_131-172
CI=0.77


[173-208]:
1d2na_PU3_173-208
CI=1.43


[209-246 ]:
1d2na_PU3_209-246
CI=0.80


Level 4
PU
Molecule needs Java 1.4 Structure


[1-22]:
1d2na_PU4_1-22
CI=0.33


[23-45]:
1d2na_PU4_23-45
CI=0.56


[46-64]:
1d2na_PU4_46-64
CI=0.20


[65-107]:
1d2na_PU4_65-107
CI=1.69


[108-130]:
1d2na_PU4_108-130
CI=1.14


[131-172]:
1d2na_PU4_131-172
CI=0.77


[173-208]:
1d2na_PU4_173-208
CI=1.43


[209-246 ]:
1d2na_PU4_209-246
CI=0.80


Level 5
PU
Molecule needs Java 1.4 Structure


[1-22]:
1d2na_PU5_1-22
CI=0.33


[23-45]:
1d2na_PU5_23-45
CI=0.56


[46-64]:
1d2na_PU5_46-64
CI=0.20


[65-107]:
1d2na_PU5_65-107
CI=1.69


[108-130]:
1d2na_PU5_108-130
CI=1.14


[131-149]:
1d2na_PU5_131-149
CI=0.39


[150-172]:
1d2na_PU5_150-172
CI=0.32


[173-208]:
1d2na_PU5_173-208
CI=1.43


[209-246 ]:
1d2na_PU5_209-246
CI=0.80


Level 6
PU
Molecule needs Java 1.4 Structure


[1-22]:
1d2na_PU6_1-22
CI=0.33


[23-45]:
1d2na_PU6_23-45
CI=0.56


[46-64]:
1d2na_PU6_46-64
CI=0.20


[65-107]:
1d2na_PU6_65-107
CI=1.69


[108-130]:
1d2na_PU6_108-130
CI=1.14


[131-149]:
1d2na_PU6_131-149
CI=0.39


[150-172]:
1d2na_PU6_150-172
CI=0.32


[173-208]:
1d2na_PU6_173-208
CI=1.43


[209-230]:
1d2na_PU6_209-230
CI=0.34


[231-246 ]:
1d2na_PU6_231-246
CI=0.00


Level 7
PU
Molecule needs Java 1.4 Structure


[1-22]:
1d2na_PU7_1-22
CI=0.33


[23-45]:
1d2na_PU7_23-45
CI=0.56


[46-64]:
1d2na_PU7_46-64
CI=0.20


[65-107]:
1d2na_PU7_65-107
CI=1.69


[108-130]:
1d2na_PU7_108-130
CI=1.14


[131-149]:
1d2na_PU7_131-149
CI=0.39


[150-172]:
1d2na_PU7_150-172
CI=0.32


[173-189]:
1d2na_PU7_173-189
CI=0.11


[190-208]:
1d2na_PU7_190-208
CI=0.00


[209-230]:
1d2na_PU7_209-230
CI=0.34


[231-246 ]:
1d2na_PU7_231-246
CI=0.00


Final level 8

PU
Molecule needs Java 1.4 Structure


[1-22]:
1d2na_PU_1-22
CI=0.33


[23-45]:
1d2na_PU_23-45
CI=0.56


[46-64]:
1d2na_PU_46-64
CI=0.20


[65-88]:
1d2na_PU_65-88
CI=0.08


[89-107]:
1d2na_PU_89-107
CI=0.48


[108-130]:
1d2na_PU_108-130
CI=1.14


[131-149]:
1d2na_PU_131-149
CI=0.39


[150-172]:
1d2na_PU_150-172
CI=0.32


[173-189]:
1d2na_PU_173-189
CI=0.11


[190-208]:
1d2na_PU_190-208
CI=0.00


[209-230]:
1d2na_PU_209-230
CI=0.34


[231-246 ]:
1d2na_PU_231-246
CI=0.00