Protein Peeling

Results

announcement

19/01/2005 -new version
15/08/2005 -new help

Parameters choosen


R-value: 95

Minimal size of secondary structure: 8

Minimal size of protein unit: 16

Maximal size of protein unit: 0

Pruning tree ? No   CI cut-off:  0.2

Cut-off distance between atom: 8

Delta value in logistic function: 1.5



Hierarchical process of splitting



Tree
Contact Matrix



Visualisation of Protein units at all levels


Level 0
PU
Molecule needs Java 1.4 Structure


[1-34]:
1d2va_PU0_1-34
CI=1.55


[35-77]:
1d2va_PU0_35-77
CI=0.96


[78-104 ]:
1d2va_PU0_78-104
CI=0.00


Level 1
PU
Molecule needs Java 1.4 Structure


[1-34]:
1d2va_PU1_1-34
CI=1.55


[35-58]:
1d2va_PU1_35-58
CI=1.62


[59-77]:
1d2va_PU1_59-77
CI=0.00


[78-104 ]:
1d2va_PU1_78-104
CI=0.00


Final level 2

PU
Molecule needs Java 1.4 Structure


[1-18]:
1d2va_PU_1-18
CI=0.41


[19-34]:
1d2va_PU_19-34
CI=0.11


[35-58]:
1d2va_PU_35-58
CI=1.62


[59-77]:
1d2va_PU_59-77
CI=0.00


[78-104 ]:
1d2va_PU_78-104
CI=0.00